Click here to switch to the map view.

The map label for this gene is int2'

Identifier: 62390730

GI number: 62390730

Start: 1964653

End: 1965342

Strand: Reverse

Name: int2'

Synonym: cg2071

Alternate gene names: NA

Gene position: 1965342-1964653 (Counterclockwise)

Preceding gene: 62390731

Following gene: 62390729

Centisome position: 59.87

GC content: 50.0

Gene sequence:

>690_bases
TTGCGCTCGGAGAGGTACAGGGCACGCTTCATGCACGAGGGTAGGCGATACTCTGCCCCGTACACTTTCGGTACCAAGGG
TGAGGCTAATGAGTTCTTGGCCTCTGAACGCACAGCCATCATCAATGGCACATGGATGGATTTTGAGATGCGGGAGAGGT
TTGAGCGGGCACAGCTTGAGGCTGAAGAACGCATGATGGAGACCTTCTTTAGTTATGCATCGAGGTGGATAGAAACCCGG
ACAAATGCCCAAGGAAAGAAACTTAGCCAAGGGGTGAAAGATGATTACTTTCGTTATATAAAATCAGATCGACTAAGTTA
TTGGGCTGATTATGCGCTCTGCGCAATCACCGTCGCTGATGTCCGTGAGTGGTATAGCGACACCATTCAGGATGGGAAAT
TGACCTCAATGGCACGGAGTTACAGCATGATGAAGTCTGTCATGGAGACTGCGGTAGAGGATGGCATCATTCCGACGAAT
CCGTGCAAAGTACGTGGCGGGGGTAATACCAAAACAGGAAAAAGGTTGATCCCCCAACCGATGCCGAGCTTGAAGCGAAC
ATTGGTGCACTGCCGAGTAAGTACTTTTGTTTGGCTATTGTTGCTGCTGCCGGCGCACTTCGATTCGGTGAAATCGTTGC
GCTACGAACCACCGATGTCGATGTTTATTTTGATCGCAGCGGATTTGTAG

Upstream 100 bases:

>100_bases
CTTCACTGAATGACATTTCTCAACCTGAAAACTATGCGGAAAAATGGAAGAGGGTTTGTGATATATGTCACGATCGAGGA
ATTGAGGAGAGATCGAAAAG

Downstream 100 bases:

>100_bases
ACTGTGTTCGAATAAGGATTTGCCCGGGAGGGCCTAATGTCACTTAAGCAGTGCAATCCTTACACCCTTTTTCGGGTAGA
AAAGAGGAGCGTTTCCTCTT

Product: phage integrase (N-terminal fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MRSERYRARFMHEGRRYSAPYTFGTKGEANEFLASERTAIINGTWMDFEMRERFERAQLEAEERMMETFFSYASRWIETR
TNAQGKKLSQGVKDDYFRYIKSDRLSYWADYALCAITVADVREWYSDTIQDGKLTSMARSYSMMKSVMETAVEDGIIPTN
PCKVRGGGNTKTGKRLIPQPMPSLKRTLVHCRVSTFVWLLLLLPAHFDSVKSLRYEPPMSMFILIAADL

Sequences:

>Translated_229_residues
MRSERYRARFMHEGRRYSAPYTFGTKGEANEFLASERTAIINGTWMDFEMRERFERAQLEAEERMMETFFSYASRWIETR
TNAQGKKLSQGVKDDYFRYIKSDRLSYWADYALCAITVADVREWYSDTIQDGKLTSMARSYSMMKSVMETAVEDGIIPTN
PCKVRGGGNTKTGKRLIPQPMPSLKRTLVHCRVSTFVWLLLLLPAHFDSVKSLRYEPPMSMFILIAADL
>Mature_229_residues
MRSERYRARFMHEGRRYSAPYTFGTKGEANEFLASERTAIINGTWMDFEMRERFERAQLEAEERMMETFFSYASRWIETR
TNAQGKKLSQGVKDDYFRYIKSDRLSYWADYALCAITVADVREWYSDTIQDGKLTSMARSYSMMKSVMETAVEDGIIPTN
PCKVRGGGNTKTGKRLIPQPMPSLKRTLVHCRVSTFVWLLLLLPAHFDSVKSLRYEPPMSMFILIAADL

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 26619; Mature: 26619

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSERYRARFMHEGRRYSAPYTFGTKGEANEFLASERTAIINGTWMDFEMRERFERAQLE
CCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHH
AEERMMETFFSYASRWIETRTNAQGKKLSQGVKDDYFRYIKSDRLSYWADYALCAITVAD
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VREWYSDTIQDGKLTSMARSYSMMKSVMETAVEDGIIPTNPCKVRGGGNTKTGKRLIPQP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCC
MPSLKRTLVHCRVSTFVWLLLLLPAHFDSVKSLRYEPPMSMFILIAADL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
>Mature Secondary Structure
MRSERYRARFMHEGRRYSAPYTFGTKGEANEFLASERTAIINGTWMDFEMRERFERAQLE
CCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHH
AEERMMETFFSYASRWIETRTNAQGKKLSQGVKDDYFRYIKSDRLSYWADYALCAITVAD
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VREWYSDTIQDGKLTSMARSYSMMKSVMETAVEDGIIPTNPCKVRGGGNTKTGKRLIPQP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCC
MPSLKRTLVHCRVSTFVWLLLLLPAHFDSVKSLRYEPPMSMFILIAADL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]