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The map label for this gene is tnp16b(ISCg16b) [H]

Identifier: 62390404

GI number: 62390404

Start: 1604939

End: 1606099

Strand: Direct

Name: tnp16b(ISCg16b) [H]

Synonym: cg1716

Alternate gene names: 62390404

Gene position: 1604939-1606099 (Clockwise)

Preceding gene: 62390403

Following gene: 62390409

Centisome position: 48.89

GC content: 55.73

Gene sequence:

>1161_bases
GTGGATGAGCAACGCGCCTTTGATCAAGGACTCAAGGAAGAAAACACCTTGATCACAGATCTCACCACCTGTGCCAGGCT
GAGCCATAACAAGGCATTACGGCTGATCAAGCTGTCGAAATCAACGGCGTATTACCGCAACAAGCCGCGTCCCCGTCCTG
CACCGAAACCTGTCCTGCAGGCCGTGCCAGCACCAACAGCACCTGGTGTGGAACCCACACCAGAGCCTTGGCAGGGGAAG
GAGCCAGCAGTGTCGTCGGTGCGTCAAGCGTTGGCAGAACACGAACGCCAGTTCATTGTTGATGCGATCACCGCGTACCC
ACAACTGAGCGTTAGTGGGGTGTTTAACATGTTGTTTAACAAAGGCATCTACCGCGCATCACTACGTACATGGTGGCGTG
TTGCCAAGCAGCACAAGTTGTTACACAAAGACCGAGTCAGTGCCCTGTCCCCGGGGAAACGATCACCAACGCCACGGGTT
AAGCCGAGGTTGGAAGCAACACAGCCTGGTCAGGTGGTGTGTTGGGATGTGACGTTCTTGCCGTCGCTGGTACGTGGTAA
GACCTATGCGTTGCATCTGGCGATTGATTTGTTTTCCCGCAAGATTGTTGGGGCGAAGGTCGCGCCGACGGAAAATACCT
CCACCGCGGTGGAGTTGTTAACGCAGGTGTTAGCGGATAATCCGGGTGTGGTGACGGTGCATTCGGATAATGGGTCGGCG
ATGACATCGACGAGGGTGCGGCGGTTGTTAGCGGATCATGGTGTGGCGTTGTCGTTGATTCGGCCGCGGGTGAGTGATGA
TAATGCGTTTGTGGAGTCGGTGTTTCATACGTTGAAGTATCGGCCGTTTTATCCGAAGGTGTTTGCATCGATGGATCAGG
CCCGGGTGTGGGTGGAGGAGTTTGTGGTGTATTACAACACGGTTCATCCGCATTCTGGTGTGGCTGGGCATACTCCGCAG
TCGGTGTTTGATGGTAGTTGGAGGGCGGCTCATAGGTTGCGTGTGCAGGCGTTGGATGCCCATTACCGGCAGTTCCCGCA
GCGGTATGTGGGGCGGCCGGTGGTTCAGGAAGTTGCTGGTGTGGTGCGTCTTAATGGTGCGCGTGATGATGGGTCTGTAC
AGGAGAGGGTTGGTGGTGTAGCGTCGCTGTTAAGTGCTTGA

Upstream 100 bases:

>100_bases
AAGACCATCAGAATCAAATGGTGATCGATATCTTGGGAAAAGCTATTGGGACCAGGCCCAATCCTGGCGAGGGCTTAGAC
GAGGAGGACGCCACCTAAAC

Downstream 100 bases:

>100_bases
GTTAGCATGTGTTCTTATCGCCCCCCTGGTTCACAAACCCCTGGCAGCGAGCGGAAAAGTGCATTTTTAGGCCAAGGGCC
CTCGGATCTTCGAGCGCTTT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MDEQRAFDQGLKEENTLITDLTTCARLSHNKALRLIKLSKSTAYYRNKPRPRPAPKPVLQAVPAPTAPGVEPTPEPWQGK
EPAVSSVRQALAEHERQFIVDAITAYPQLSVSGVFNMLFNKGIYRASLRTWWRVAKQHKLLHKDRVSALSPGKRSPTPRV
KPRLEATQPGQVVCWDVTFLPSLVRGKTYALHLAIDLFSRKIVGAKVAPTENTSTAVELLTQVLADNPGVVTVHSDNGSA
MTSTRVRRLLADHGVALSLIRPRVSDDNAFVESVFHTLKYRPFYPKVFASMDQARVWVEEFVVYYNTVHPHSGVAGHTPQ
SVFDGSWRAAHRLRVQALDAHYRQFPQRYVGRPVVQEVAGVVRLNGARDDGSVQERVGGVASLLSA

Sequences:

>Translated_386_residues
MDEQRAFDQGLKEENTLITDLTTCARLSHNKALRLIKLSKSTAYYRNKPRPRPAPKPVLQAVPAPTAPGVEPTPEPWQGK
EPAVSSVRQALAEHERQFIVDAITAYPQLSVSGVFNMLFNKGIYRASLRTWWRVAKQHKLLHKDRVSALSPGKRSPTPRV
KPRLEATQPGQVVCWDVTFLPSLVRGKTYALHLAIDLFSRKIVGAKVAPTENTSTAVELLTQVLADNPGVVTVHSDNGSA
MTSTRVRRLLADHGVALSLIRPRVSDDNAFVESVFHTLKYRPFYPKVFASMDQARVWVEEFVVYYNTVHPHSGVAGHTPQ
SVFDGSWRAAHRLRVQALDAHYRQFPQRYVGRPVVQEVAGVVRLNGARDDGSVQERVGGVASLLSA
>Mature_386_residues
MDEQRAFDQGLKEENTLITDLTTCARLSHNKALRLIKLSKSTAYYRNKPRPRPAPKPVLQAVPAPTAPGVEPTPEPWQGK
EPAVSSVRQALAEHERQFIVDAITAYPQLSVSGVFNMLFNKGIYRASLRTWWRVAKQHKLLHKDRVSALSPGKRSPTPRV
KPRLEATQPGQVVCWDVTFLPSLVRGKTYALHLAIDLFSRKIVGAKVAPTENTSTAVELLTQVLADNPGVVTVHSDNGSA
MTSTRVRRLLADHGVALSLIRPRVSDDNAFVESVFHTLKYRPFYPKVFASMDQARVWVEEFVVYYNTVHPHSGVAGHTPQ
SVFDGSWRAAHRLRVQALDAHYRQFPQRYVGRPVVQEVAGVVRLNGARDDGSVQERVGGVASLLSA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1789981, Length=158, Percent_Identity=30.379746835443, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 42912; Mature: 42912

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQRAFDQGLKEENTLITDLTTCARLSHNKALRLIKLSKSTAYYRNKPRPRPAPKPVLQ
CCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHH
AVPAPTAPGVEPTPEPWQGKEPAVSSVRQALAEHERQFIVDAITAYPQLSVSGVFNMLFN
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KGIYRASLRTWWRVAKQHKLLHKDRVSALSPGKRSPTPRVKPRLEATQPGQVVCWDVTFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH
PSLVRGKTYALHLAIDLFSRKIVGAKVAPTENTSTAVELLTQVLADNPGVVTVHSDNGSA
HHHHCCCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCH
MTSTRVRRLLADHGVALSLIRPRVSDDNAFVESVFHTLKYRPFYPKVFASMDQARVWVEE
HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FVVYYNTVHPHSGVAGHTPQSVFDGSWRAAHRLRVQALDAHYRQFPQRYVGRPVVQEVAG
HHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VVRLNGARDDGSVQERVGGVASLLSA
HEEECCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDEQRAFDQGLKEENTLITDLTTCARLSHNKALRLIKLSKSTAYYRNKPRPRPAPKPVLQ
CCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHH
AVPAPTAPGVEPTPEPWQGKEPAVSSVRQALAEHERQFIVDAITAYPQLSVSGVFNMLFN
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KGIYRASLRTWWRVAKQHKLLHKDRVSALSPGKRSPTPRVKPRLEATQPGQVVCWDVTFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH
PSLVRGKTYALHLAIDLFSRKIVGAKVAPTENTSTAVELLTQVLADNPGVVTVHSDNGSA
HHHHCCCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCH
MTSTRVRRLLADHGVALSLIRPRVSDDNAFVESVFHTLKYRPFYPKVFASMDQARVWVEE
HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FVVYYNTVHPHSGVAGHTPQSVFDGSWRAAHRLRVQALDAHYRQFPQRYVGRPVVQEVAG
HHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VVRLNGARDDGSVQERVGGVASLLSA
HEEECCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]