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The map label for this gene is yocS [H]

Identifier: 62390145

GI number: 62390145

Start: 1325001

End: 1326008

Strand: Direct

Name: yocS [H]

Synonym: cg1419

Alternate gene names: 62390145

Gene position: 1325001-1326008 (Clockwise)

Preceding gene: 62390144

Following gene: 62390146

Centisome position: 40.36

GC content: 54.07

Gene sequence:

>1008_bases
ATGAGTACTCAAGTTGAACTCAAAACACCGAAATCGGAAGACCGGGCAGCATATATCGCTGCATTGGGATTCCCGGTCTT
GGTCATCATTGGCGGCATCATCGGATTCACAGCCTCGGATGTTGTGCTCAATATTTCTTCGTGGGTCAATCCTTTGCTGG
GCATCATCATGTTCTCCATGGGCCTGACCTTGAAGCCAGTTGACTTCGCCCTTGTTGCTAAACGCCCACTCCCAGTTCTT
ATCGGCGTGATCGCCCAGTTTGTCATCATGCCCCTGATCGCATTGCTGGTGGTCTGGGTTTTGCAGCTGCCTGCGGAAAT
TGCGGCCGGTGTCATCTTGGTTGGTTGTGCACCTGGCGGAACTTCCTCCAACGTGGTGTCTTACCTGTCCCGTGGTGATG
TTGCGCTGTCTGTCACCATGACTTCCATCTCCACGCTGCTTGCTCCAATTTTCACTCCACTGCTTACCCTGTGGCTGGCG
GGGCAATACATGCCACTTAATGCCGCTGATATGGCTGTATCCATCGTCCAAGTTGTGCTGATCCCAGTCGTGGGCGGACT
TGTTGTGCGGTTGATCTTCCCGACACTCATTGGCAAGGTTTTGCCTCTTTTGCCATGGATTTCAGTCATTGCGATTTCAT
TGATCGTTGCCATCGTGGTCGCTGGTTCAAGGGATAAAATCCTCGAAGCAGGACTGCTCGTGCTGGCTGCCGTGATTATT
CACAACACCCTCGGCTACTCCCTGGGATACCTCGCTGCGAAATTCACTGGGCAGCCTGCTGCAGCTCGACGCACTACCGC
GATTGAGGTCGGTATGCAAAACTCCGGCCTCGCAGCTGGACTCGCATCCCAGTACATGTCACCAATGTCTGCTCTGCCAG
GCGCTATCTTCTCTGTCTGGCACAACCTTTCCGGAGCACTTCTTGCTGCATTGTGCAGGGCGTCCGATAAGAGGGCTGCG
GAGAAGGTGGCTTCAGAAAAGGCTGCCTCGGAGAAGGCCGCTTCCTAA

Upstream 100 bases:

>100_bases
GTAGCGGTCGAATTATTTGCCTGTGGGCATAATTTTGAGACAAAATAATAGAAACGTCTCAGATGTTGGGAAGTTCTTCA
CGCTATCAGTTAGGGAGCAC

Downstream 100 bases:

>100_bases
AAGGCTTCGCTCCTAAAACTCTTTAAGAGTCAGGCCAACCTAGCCGCCCCGGTTTTCTCGGAAAAATCAGGCGGTCTTTG
GCTTTTCTAAAGTGTTTCTA

Product: Na+-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSTQVELKTPKSEDRAAYIAALGFPVLVIIGGIIGFTASDVVLNISSWVNPLLGIIMFSMGLTLKPVDFALVAKRPLPVL
IGVIAQFVIMPLIALLVVWVLQLPAEIAAGVILVGCAPGGTSSNVVSYLSRGDVALSVTMTSISTLLAPIFTPLLTLWLA
GQYMPLNAADMAVSIVQVVLIPVVGGLVVRLIFPTLIGKVLPLLPWISVIAISLIVAIVVAGSRDKILEAGLLVLAAVII
HNTLGYSLGYLAAKFTGQPAAARRTTAIEVGMQNSGLAAGLASQYMSPMSALPGAIFSVWHNLSGALLAALCRASDKRAA
EKVASEKAASEKAAS

Sequences:

>Translated_335_residues
MSTQVELKTPKSEDRAAYIAALGFPVLVIIGGIIGFTASDVVLNISSWVNPLLGIIMFSMGLTLKPVDFALVAKRPLPVL
IGVIAQFVIMPLIALLVVWVLQLPAEIAAGVILVGCAPGGTSSNVVSYLSRGDVALSVTMTSISTLLAPIFTPLLTLWLA
GQYMPLNAADMAVSIVQVVLIPVVGGLVVRLIFPTLIGKVLPLLPWISVIAISLIVAIVVAGSRDKILEAGLLVLAAVII
HNTLGYSLGYLAAKFTGQPAAARRTTAIEVGMQNSGLAAGLASQYMSPMSALPGAIFSVWHNLSGALLAALCRASDKRAA
EKVASEKAASEKAAS
>Mature_334_residues
STQVELKTPKSEDRAAYIAALGFPVLVIIGGIIGFTASDVVLNISSWVNPLLGIIMFSMGLTLKPVDFALVAKRPLPVLI
GVIAQFVIMPLIALLVVWVLQLPAEIAAGVILVGCAPGGTSSNVVSYLSRGDVALSVTMTSISTLLAPIFTPLLTLWLAG
QYMPLNAADMAVSIVQVVLIPVVGGLVVRLIFPTLIGKVLPLLPWISVIAISLIVAIVVAGSRDKILEAGLLVLAAVIIH
NTLGYSLGYLAAKFTGQPAAARRTTAIEVGMQNSGLAAGLASQYMSPMSALPGAIFSVWHNLSGALLAALCRASDKRAAE
KVASEKAASEKAAS

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=308, Percent_Identity=31.8181818181818, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI37537552, Length=297, Percent_Identity=24.5791245791246, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI58219066, Length=224, Percent_Identity=33.0357142857143, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI4506971, Length=289, Percent_Identity=27.3356401384083, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI215422368, Length=218, Percent_Identity=30.7339449541284, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI215422370, Length=218, Percent_Identity=30.7339449541284, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI9790143, Length=218, Percent_Identity=30.7339449541284, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI24308414, Length=328, Percent_Identity=26.8292682926829, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115533076, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 34741; Mature: 34610

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQVELKTPKSEDRAAYIAALGFPVLVIIGGIIGFTASDVVLNISSWVNPLLGIIMFSM
CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHH
GLTLKPVDFALVAKRPLPVLIGVIAQFVIMPLIALLVVWVLQLPAEIAAGVILVGCAPGG
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCC
TSSNVVSYLSRGDVALSVTMTSISTLLAPIFTPLLTLWLAGQYMPLNAADMAVSIVQVVL
CHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
IPVVGGLVVRLIFPTLIGKVLPLLPWISVIAISLIVAIVVAGSRDKILEAGLLVLAAVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
HNTLGYSLGYLAAKFTGQPAAARRTTAIEVGMQNSGLAAGLASQYMSPMSALPGAIFSVW
HHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHH
HNLSGALLAALCRASDKRAAEKVASEKAASEKAAS
HCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STQVELKTPKSEDRAAYIAALGFPVLVIIGGIIGFTASDVVLNISSWVNPLLGIIMFSM
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHH
GLTLKPVDFALVAKRPLPVLIGVIAQFVIMPLIALLVVWVLQLPAEIAAGVILVGCAPGG
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCC
TSSNVVSYLSRGDVALSVTMTSISTLLAPIFTPLLTLWLAGQYMPLNAADMAVSIVQVVL
CHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
IPVVGGLVVRLIFPTLIGKVLPLLPWISVIAISLIVAIVVAGSRDKILEAGLLVLAAVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
HNTLGYSLGYLAAKFTGQPAAARRTTAIEVGMQNSGLAAGLASQYMSPMSALPGAIFSVW
HHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHH
HNLSGALLAALCRASDKRAAEKVASEKAASEKAAS
HCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]