| Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
|---|---|
| Accession | NC_006958 |
| Length | 3,282,708 |
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The map label for this gene is rho [H]
Identifier: 62390087
GI number: 62390087
Start: 1266610
End: 1268898
Strand: Direct
Name: rho [H]
Synonym: cg1354
Alternate gene names: 62390087
Gene position: 1266610-1268898 (Clockwise)
Preceding gene: 62390079
Following gene: 62390088
Centisome position: 38.58
GC content: 55.7
Gene sequence:
>2289_bases GTGACAACCACAGACAACACCGCAGCGAATCAGGGTGAACTGACCGCCCTCCGACTGCCGGATCTGCGCAAAATTGCCGC CGACCTTGGGCTCAAGGGAACCTCGGCATTGCGTAAGGGCGATCTGATCAACGCCATCTCTGCAGCCCGCGAGGGTAAGC CAACCGCAGCTGCGAAGAAGACTTCCCCACGCAAGGCCCCATCACGCACCCGTGCGACACAGCCTTCCGCACCGGTTGAG CAAGCACAAGAAGCTCCCGCGCAAACTTCAACTGCACCTGCTTCAGCACCATCTGAAGAGACTCCCGCAGCTCCCGCTCG TCGTGGACGTCGCCGTGTAACCACCACCGCGACCACCCCAGAGCCAGCAGCGCCTGCACAATCCCAGCCTGCAGAAGCTC AACCAGCACAGACTCAGGCTGCACAGCAAGAAGAACTTCCTGTTGCAGCGAAGGAGTCCGCACCAGCTACAGAAAACACT CAGGGCCAAGCTCAGGGCCAAGCTCAGGGCCAAGCTCAGGGCGATGAGCACGATGATCGTTTTGAGTCCCGTTCTGCTGC ACGCCGAGCACGCCGCAACCGTCAGCGCCAGATCCACCGCGATGGCGATGACAATGCGAATGCAAACACAGAGTCTGAGC AGAACACCCCTGCCCAGAACGCAACCGCACAGGCTGAGTCTGAGCAGACTGCAGCTCCTGCACAGGCTGAAGCAGCTGAG CAGAACCAGAACGATAACAGCGAGTCCTCCGAGAACCGCAGCGATAACTACCGCAACAACAATCGTCGTTCCCGCAACAA CCGGAACAATCGCAATTACCGCGATAACAACGAGTCCTCTGATAATGCAGGACAGTCCAGCAATGATGATGCCGACAACA ATCAGGCACGGTCTGAGGACAATAACGACGATCGCCGTTCTCGTAATAACCGTAACAACGACCGCAATGATCGTAACGAT CGCAATGACCGCGACAACGACGACAACGATGATCGCCGCAACCGTCGCGGACGCCGCAATCGCCGTGGACGCAACGACCG TAACGATCGCGACAACCGAGATAACCGGGATAACCGCGACAACAGCAACGATGGCGACAACAACCAGCAAGATGAGCTGC AGCAGGTAGCAGGCATCCTGGACATCGTGGACCATAACGTCGCATTCGTGCGCACCACCGGTTACCACGCTGCACCTTCT GACGTGTTTGTCAGCAACCAGCTGATCCGCCGTATGGGTCTTCGTTCCGGTGACGCCATTGAAGGTCAGGTTCGTATGAA CCAGGGTGGTGGCAACCACAACAACCATGGTCGCAACCGTCAGAAGTACAACAACTTGGTGCGCGTGGAGATGGTTAACG GTCTTCCTGCTGAAGAGACTCGCAACCGTCCTGAGTTCGGCAAGCTGACTCCTCTGTACCCGAACCAGCGTCTGCGTTTG GAAACTGAGCAGAAGATTCTTACCACTCGTGTGATCGACTTGATCATGCCTATTGGTAAGGGACAGCGTGCTTTGATTGT GTCGCCACCTAAGGCTGGTAAGACCACGATCCTGCAGAACATTGCGAACGCTATTTCCACCAACAACCCAGAGTGCTACC TCATGGTTGTTTTGGTTGATGAGCGTCCGGAAGAAGTTACTGATATGCAGCGCTCCGTCAACGGCGAAGTGATTTCTTCT ACTTTCGATCGTCCACCATCAGAGCACACTGCGGTTGCTGAGCTGGCGATTGAGCGTGCGAAGCGCCTGGTGGAGCAGGG CCAGGACGTCGTTGTTCTGCTTGACTCCATTACTCGTTTGGGCCGTGCGTACAACAACAGCTCACCTGCATCGGGACGTA TTTTGTCCGGTGGTGTGGATTCCAATGCACTGTACCCGCCGAAGCGTTTCTTGGGTGCTGCTCGAAACATCGAAAATGGT GGATCTTTGACCATCATCGCAACTGCCATGGTGGAAACCGGCTCTGCTGGTGACACCGTGATCTTCGAGGAGTTCAAGGG CACTGGTAACGCTGAGCTGAAGCTGGATCGTAAGATCTCTGAGCGCCGCGTTTTCCCAGCTGTGGATGTTAATCCTTCTG GTACTCGTAAGGACGAGCTGTTGCTCAACCCGGACGAGGCTCGCATTATGCACAAGCTGCGTCGTATTCTGTCTGCACTT GATAATCAGCAAGCCATTGATCTGTTGATCAAGCAGCTGAAGAAGACCAAGTCCAATGCGGAATTCCTCATGCAGGTTGC TTCCAGCGCTCCAATGGCAGGCACAGAAAAAGAGGAGGATTACTCCTAA
Upstream 100 bases:
>100_bases TCAATTACACAGAAGCCGAGTTCAGCCATATTTTTCGCCCGTCATATGAAAAACGGGTACATCACCGCAGCTTGGTCTGA ACTGCAATGAAAGGAAATCT
Downstream 100 bases:
>100_bases TGGCATCGCAGGTTTCTGCAGTTGACGATATTTTGTCGGAGTACCACGGTCTGGAACAGCAGATGGCTGATCCGGAGTTG CACAATGATGCGGCAGCAGC
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 762; Mature: 761
Protein sequence:
>762_residues MTTTDNTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKKTSPRKAPSRTRATQPSAPVE QAQEAPAQTSTAPASAPSEETPAAPARRGRRRVTTTATTPEPAAPAQSQPAEAQPAQTQAAQQEELPVAAKESAPATENT QGQAQGQAQGQAQGDEHDDRFESRSAARRARRNRQRQIHRDGDDNANANTESEQNTPAQNATAQAESEQTAAPAQAEAAE QNQNDNSESSENRSDNYRNNNRRSRNNRNNRNYRDNNESSDNAGQSSNDDADNNQARSEDNNDDRRSRNNRNNDRNDRND RNDRDNDDNDDRRNRRGRRNRRGRNDRNDRDNRDNRDNRDNSNDGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPS DVFVSNQLIRRMGLRSGDAIEGQVRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRL ETEQKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERPEEVTDMQRSVNGEVISS TFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENG GSLTIIATAMVETGSAGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSAL DNQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGTEKEEDYS
Sequences:
>Translated_762_residues MTTTDNTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKKTSPRKAPSRTRATQPSAPVE QAQEAPAQTSTAPASAPSEETPAAPARRGRRRVTTTATTPEPAAPAQSQPAEAQPAQTQAAQQEELPVAAKESAPATENT QGQAQGQAQGQAQGDEHDDRFESRSAARRARRNRQRQIHRDGDDNANANTESEQNTPAQNATAQAESEQTAAPAQAEAAE QNQNDNSESSENRSDNYRNNNRRSRNNRNNRNYRDNNESSDNAGQSSNDDADNNQARSEDNNDDRRSRNNRNNDRNDRND RNDRDNDDNDDRRNRRGRRNRRGRNDRNDRDNRDNRDNRDNSNDGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPS DVFVSNQLIRRMGLRSGDAIEGQVRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRL ETEQKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERPEEVTDMQRSVNGEVISS TFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENG GSLTIIATAMVETGSAGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSAL DNQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGTEKEEDYS >Mature_761_residues TTTDNTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKKTSPRKAPSRTRATQPSAPVEQ AQEAPAQTSTAPASAPSEETPAAPARRGRRRVTTTATTPEPAAPAQSQPAEAQPAQTQAAQQEELPVAAKESAPATENTQ GQAQGQAQGQAQGDEHDDRFESRSAARRARRNRQRQIHRDGDDNANANTESEQNTPAQNATAQAESEQTAAPAQAEAAEQ NQNDNSESSENRSDNYRNNNRRSRNNRNNRNYRDNNESSDNAGQSSNDDADNNQARSEDNNDDRRSRNNRNNDRNDRNDR NDRDNDDNDDRRNRRGRRNRRGRNDRNDRDNRDNRDNRDNSNDGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPSD VFVSNQLIRRMGLRSGDAIEGQVRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRLE TEQKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERPEEVTDMQRSVNGEVISST FDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGG SLTIIATAMVETGSAGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSALD NQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGTEKEEDYS
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=373, Percent_Identity=54.9597855227882, Blast_Score=405, Evalue=1e-114,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 83968; Mature: 83837
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTDNTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKK CCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHHCC TSPRKAPSRTRATQPSAPVEQAQEAPAQTSTAPASAPSEETPAAPARRGRRRVTTTATTP CCCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEECCCC EPAAPAQSQPAEAQPAQTQAAQQEELPVAAKESAPATENTQGQAQGQAQGQAQGDEHDDR CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH FESRSAARRARRNRQRQIHRDGDDNANANTESEQNTPAQNATAQAESEQTAAPAQAEAAE HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH QNQNDNSESSENRSDNYRNNNRRSRNNRNNRNYRDNNESSDNAGQSSNDDADNNQARSED HCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NNDDRRSRNNRNNDRNDRNDRNDRDNDDNDDRRNRRGRRNRRGRNDRNDRDNRDNRDNRD CCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC NSNDGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPSDVFVSNQLIRRMGLRSGDAI CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCC EGQVRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRL CCEEEECCCCCCCCCCCCCHHHHHCEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCEEE ETEQKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVD HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC ERPEEVTDMQRSVNGEVISSTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRL CCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH GRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTV HHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEHHCCCCCCEE IFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSAL EEHHHCCCCCCEEEECCHHHHCCCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH DNQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGTEKEEDYS CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TTTDNTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKK CCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHHCC TSPRKAPSRTRATQPSAPVEQAQEAPAQTSTAPASAPSEETPAAPARRGRRRVTTTATTP CCCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEECCCC EPAAPAQSQPAEAQPAQTQAAQQEELPVAAKESAPATENTQGQAQGQAQGQAQGDEHDDR CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH FESRSAARRARRNRQRQIHRDGDDNANANTESEQNTPAQNATAQAESEQTAAPAQAEAAE HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH QNQNDNSESSENRSDNYRNNNRRSRNNRNNRNYRDNNESSDNAGQSSNDDADNNQARSED HCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NNDDRRSRNNRNNDRNDRNDRNDRDNDDNDDRRNRRGRRNRRGRNDRNDRDNRDNRDNRD CCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC NSNDGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPSDVFVSNQLIRRMGLRSGDAI CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCC EGQVRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRL CCEEEECCCCCCCCCCCCCHHHHHCEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCEEE ETEQKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVD HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC ERPEEVTDMQRSVNGEVISSTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRL CCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH GRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTV HHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEHHCCCCCCEE IFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSAL EEHHHCCCCCCEEEECCHHHHCCCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH DNQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGTEKEEDYS CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]