Click here to switch to the map view.

The map label for this gene is dapC [H]

Identifier: 62389993

GI number: 62389993

Start: 1150747

End: 1151850

Strand: Direct

Name: dapC [H]

Synonym: cg1253

Alternate gene names: 62389993

Gene position: 1150747-1151850 (Clockwise)

Preceding gene: 62389992

Following gene: 62389994

Centisome position: 35.05

GC content: 56.79

Gene sequence:

>1104_bases
ATGACCTCTCGCACCCCGCTTGTTTCTGTTCTTCCTGATTTTCCGTGGGATTCGCTCGCTTCCGCAAAAGCCAAAGCTGC
GTCTCACCCGGATGGGATCGTGAATCTTTCTGTTGGCACTCCGGTTGATCCGGTCGCGCCCAGCATTCAGATCGCGTTGG
CAGAAGCAGCGGGGTTTTCGGGTTACCCTCAAACCATCGGCACCCCGGAACTCCGCGCAGCCATCAGGGGCGCGCTTGAG
CGGCGCTACAACATGACAAAGCTTGTCGACGCCTCCCTCCTCCCCGTCGTGGGTACCAAGGAGGCAATTGCCCTTCTTCC
ATTCGCGTTGGGTATTTCCGGCACCGTTGTCATCCCAGAGATTGCGTACCCAACCTACGAAGTCGCTGTCGTGGCCGCAG
GATGCACCGTGTTGCGTTCTGATTCGCTGTTTAAGCTCGGCCCGCAGATCCCGTCGATGATGTTTATCAACTCACCATCC
AACCCCACAGGCAAGGTTCTGGGCATCCCACACTTGCGCAAGGTTGTGAAGTGGGCGCAGGAAAACAACGTGATCCTCGC
AGCTGATGAATGCTACTTGGGTCTTGGCTGGGACGATGAAAACCCACCGATCTCAATTTTGGATCCACGTGTCTGCGATG
GCGACCACACCAACTTGATCGCCATTCACTCGCTGTCTAAAACCTCAAACCTCGCTTCTTACCGCGCAGGTTACCTCGTT
GGCGATCCAGCGCTGATTGGTGAACTCACGGAAGTCCGTAAGAACTTGGGTCTCATGGTTCCTTTCCCAATCCAGCAGGC
CATGATCGCAGCCCTCAACGACGATGACCAAGAGGCAGGGCAGAAGCTCACCTACGCGATTCGTCGAGCAAAACTCATGC
GCGCCCTGTTGGAATCCGGCTTTCAGGTAGATAATTCTGAAGCGGGTCTGTACCTCTGGGCGACGCGTGAAGAACCTTGC
CGTGACACTGTCGATTGGTTCGCTGAGCGTGGCATTCTCGTTGCCCCAGGAGACTTCTATGGCCCTCGCGGAGCGCAGCA
TGTGCGTGTGGCGATGACCGAAACCGACGAGCGCGTCGACGCCTTTGTTTCTCGCCTGAGCTAA

Upstream 100 bases:

>100_bases
TCGATGATCTGGGCTCCCCAGGTGGTGCGGCTAAGCTTGGACCACAAGATTTTGATCACCCAATGATCGCTGCGCTGCCG
CCTCAGGCATAATCTAACGC

Downstream 100 bases:

>100_bases
ACACGACTAAGCTTATTTTGTTTAATTGAGTTTGAAGTTTTCCGTCGAAAGAGGCCATTTGAGTTCCGAGTCCAGTCCTG
AGTCGAGTACCGAGCAAAAA

Product: N-succinyldiaminopimelate aminotransferase

Products: NA

Alternate protein names: DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase [H]

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTSRTPLVSVLPDFPWDSLASAKAKAASHPDGIVNLSVGTPVDPVAPSIQIALAEAAGFSGYPQTIGTPELRAAIRGALE
RRYNMTKLVDASLLPVVGTKEAIALLPFALGISGTVVIPEIAYPTYEVAVVAAGCTVLRSDSLFKLGPQIPSMMFINSPS
NPTGKVLGIPHLRKVVKWAQENNVILAADECYLGLGWDDENPPISILDPRVCDGDHTNLIAIHSLSKTSNLASYRAGYLV
GDPALIGELTEVRKNLGLMVPFPIQQAMIAALNDDDQEAGQKLTYAIRRAKLMRALLESGFQVDNSEAGLYLWATREEPC
RDTVDWFAERGILVAPGDFYGPRGAQHVRVAMTETDERVDAFVSRLS

Sequences:

>Translated_367_residues
MTSRTPLVSVLPDFPWDSLASAKAKAASHPDGIVNLSVGTPVDPVAPSIQIALAEAAGFSGYPQTIGTPELRAAIRGALE
RRYNMTKLVDASLLPVVGTKEAIALLPFALGISGTVVIPEIAYPTYEVAVVAAGCTVLRSDSLFKLGPQIPSMMFINSPS
NPTGKVLGIPHLRKVVKWAQENNVILAADECYLGLGWDDENPPISILDPRVCDGDHTNLIAIHSLSKTSNLASYRAGYLV
GDPALIGELTEVRKNLGLMVPFPIQQAMIAALNDDDQEAGQKLTYAIRRAKLMRALLESGFQVDNSEAGLYLWATREEPC
RDTVDWFAERGILVAPGDFYGPRGAQHVRVAMTETDERVDAFVSRLS
>Mature_366_residues
TSRTPLVSVLPDFPWDSLASAKAKAASHPDGIVNLSVGTPVDPVAPSIQIALAEAAGFSGYPQTIGTPELRAAIRGALER
RYNMTKLVDASLLPVVGTKEAIALLPFALGISGTVVIPEIAYPTYEVAVVAAGCTVLRSDSLFKLGPQIPSMMFINSPSN
PTGKVLGIPHLRKVVKWAQENNVILAADECYLGLGWDDENPPISILDPRVCDGDHTNLIAIHSLSKTSNLASYRAGYLVG
DPALIGELTEVRKNLGLMVPFPIQQAMIAALNDDDQEAGQKLTYAIRRAKLMRALLESGFQVDNSEAGLYLWATREEPCR
DTVDWFAERGILVAPGDFYGPRGAQHVRVAMTETDERVDAFVSRLS

Specific function: Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788722, Length=380, Percent_Identity=28.9473684210526, Blast_Score=134, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI71994476, Length=272, Percent_Identity=25.3676470588235, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71994472, Length=272, Percent_Identity=25.3676470588235, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR019881
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.83 [H]

Molecular weight: Translated: 39534; Mature: 39403

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRTPLVSVLPDFPWDSLASAKAKAASHPDGIVNLSVGTPVDPVAPSIQIALAEAAGFS
CCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC
GYPQTIGTPELRAAIRGALERRYNMTKLVDASLLPVVGTKEAIALLPFALGISGTVVIPE
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
IAYPTYEVAVVAAGCTVLRSDSLFKLGPQIPSMMFINSPSNPTGKVLGIPHLRKVVKWAQ
CCCCCEEEEEEECCCCEEECCCCEEECCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHH
ENNVILAADECYLGLGWDDENPPISILDPRVCDGDHTNLIAIHSLSKTSNLASYRAGYLV
CCCEEEEECCEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHCCCEEE
GDPALIGELTEVRKNLGLMVPFPIQQAMIAALNDDDQEAGQKLTYAIRRAKLMRALLESG
CCHHHHHHHHHHHHHCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
FQVDNSEAGLYLWATREEPCRDTVDWFAERGILVAPGDFYGPRGAQHVRVAMTETDERVD
CEECCCCCCEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCHHHHH
AFVSRLS
HHHHHCC
>Mature Secondary Structure 
TSRTPLVSVLPDFPWDSLASAKAKAASHPDGIVNLSVGTPVDPVAPSIQIALAEAAGFS
CCCCCCCEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC
GYPQTIGTPELRAAIRGALERRYNMTKLVDASLLPVVGTKEAIALLPFALGISGTVVIPE
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
IAYPTYEVAVVAAGCTVLRSDSLFKLGPQIPSMMFINSPSNPTGKVLGIPHLRKVVKWAQ
CCCCCEEEEEEECCCCEEECCCCEEECCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHH
ENNVILAADECYLGLGWDDENPPISILDPRVCDGDHTNLIAIHSLSKTSNLASYRAGYLV
CCCEEEEECCEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHCCCEEE
GDPALIGELTEVRKNLGLMVPFPIQQAMIAALNDDDQEAGQKLTYAIRRAKLMRALLESG
CCHHHHHHHHHHHHHCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
FQVDNSEAGLYLWATREEPCRDTVDWFAERGILVAPGDFYGPRGAQHVRVAMTETDERVD
CEECCCCCCEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCHHHHH
AFVSRLS
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA