Click here to switch to the map view.

The map label for this gene is vapI [H]

Identifier: 62389920

GI number: 62389920

Start: 1087260

End: 1087559

Strand: Direct

Name: vapI [H]

Synonym: cg1173

Alternate gene names: 62389920

Gene position: 1087260-1087559 (Clockwise)

Preceding gene: 62389919

Following gene: 62389921

Centisome position: 33.12

GC content: 60.33

Gene sequence:

>300_bases
ATGGCTCAGAAGCTCTACCCGCCGATTCACCCTGGTGAGATTCTCATGGAGGACTTCATCAAGGGCTTCGGCCTCACACA
GAACAAGGTCGCCGTATCGATCGGGGTGCCTCCGCGACGCATCAACGAGATCGTGCACGGCAAGCGATCCATCACGGCCG
ATACGGCTCTGCGTCTCGGGCGGTACTTCGGTATCGACCCGCAGTTCTGGCTGAGCCTTCAGACTCAGTACGAGTTGGAG
CTCGATCGCGACGCCGGTGCAGCGACTTACGCACAGATCACGCCGCTGAAGGTCGCGTGA

Upstream 100 bases:

>100_bases
TACAGCATTCGAGTCAACGACCAGTGGCGGATCTGCTTCCGTTGGAACGACTCGGGCCCCGAAAACGTCGAGATCGTGGA
TTATCACTGAGGAGGAGACG

Downstream 100 bases:

>100_bases
GCTCGGTGGCCAGAAAACATCTGCTCTCCCTGGCAGACTGGAACAGAGGCGAGCTTGAGGCATTATTCGAGCTCGCGGAG
CAGTATGAAGCTGGCGGTGG

Product: plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MAQKLYPPIHPGEILMEDFIKGFGLTQNKVAVSIGVPPRRINEIVHGKRSITADTALRLGRYFGIDPQFWLSLQTQYELE
LDRDAGAATYAQITPLKVA

Sequences:

>Translated_99_residues
MAQKLYPPIHPGEILMEDFIKGFGLTQNKVAVSIGVPPRRINEIVHGKRSITADTALRLGRYFGIDPQFWLSLQTQYELE
LDRDAGAATYAQITPLKVA
>Mature_98_residues
AQKLYPPIHPGEILMEDFIKGFGLTQNKVAVSIGVPPRRINEIVHGKRSITADTALRLGRYFGIDPQFWLSLQTQYELEL
DRDAGAATYAQITPLKVA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 11068; Mature: 10937

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKLYPPIHPGEILMEDFIKGFGLTQNKVAVSIGVPPRRINEIVHGKRSITADTALRLG
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHH
RYFGIDPQFWLSLQTQYELELDRDAGAATYAQITPLKVA
HHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECEEECC
>Mature Secondary Structure 
AQKLYPPIHPGEILMEDFIKGFGLTQNKVAVSIGVPPRRINEIVHGKRSITADTALRLG
CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHH
RYFGIDPQFWLSLQTQYELELDRDAGAATYAQITPLKVA
HHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]