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The map label for this gene is tnp6b(ISCg6a) [H]

Identifier: 62389789

GI number: 62389789

Start: 955746

End: 956225

Strand: Direct

Name: tnp6b(ISCg6a) [H]

Synonym: cg1023

Alternate gene names: 62389789

Gene position: 955746-956225 (Clockwise)

Preceding gene: 62389788

Following gene: 62389790

Centisome position: 29.11

GC content: 52.29

Gene sequence:

>480_bases
GTGTCAGACGAATGCGGGCCTGGAAGAACACCACGGTCAGTGACCCTTTCTGCCCGGACCGAGCATATTAAAAATCATAT
GCTCGATAGCCACGGGAAACGAGACTTTACCGCTACCGTGCCTGGGACCAGGCTCGTTGGTGACATTACGTACTTAAAGA
CGGGTTCCGGGTGGCTGTATGTGGCTACCGTGATCGATTTGGCTACGCGGATGGTGGTGGGGTGGTCTATGGATTCTAAT
ATGCGCACACCGTTGGTGATCAATGCGCTGGCTATGGCGCGTGATCATGGGTGTCTTCATCCTGAAGGCGCAATTTTTCA
CTCCGATAGAGGATCGCAATACACCTCCGAGCAGTTCCAGACATGGTGCGCCGGCAACAAGATCACCCAATCCATGGGAT
TGACCGGGGTGTGTTGGGATAACGGAAGTCGCGGAGAATTTTTTCTCACATTTGAAGACCGAAATGTATCACCACTATGA

Upstream 100 bases:

>100_bases
CAGATGGCTGGCAGGGATCAGCTGACCACGTTGCTCAACCAGCGTGGTGTCAAAGTTTCTACTGGGACTGTGGGATCAAT
TATGAACGAATGAGGAGTGC

Downstream 100 bases:

>100_bases
TTTTGAGAATCACCTGTCGGACCGAACCGCGGTGATGGAGTACATCGAGGGGCAGGTCACAACCGGCGCCGCCCGCATAG
CAATAACCAGGGGCTCTCAC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSDECGPGRTPRSVTLSARTEHIKNHMLDSHGKRDFTATVPGTRLVGDITYLKTGSGWLYVATVIDLATRMVVGWSMDSN
MRTPLVINALAMARDHGCLHPEGAIFHSDRGSQYTSEQFQTWCAGNKITQSMGLTGVCWDNGSRGEFFLTFEDRNVSPL

Sequences:

>Translated_159_residues
MSDECGPGRTPRSVTLSARTEHIKNHMLDSHGKRDFTATVPGTRLVGDITYLKTGSGWLYVATVIDLATRMVVGWSMDSN
MRTPLVINALAMARDHGCLHPEGAIFHSDRGSQYTSEQFQTWCAGNKITQSMGLTGVCWDNGSRGEFFLTFEDRNVSPL
>Mature_158_residues
SDECGPGRTPRSVTLSARTEHIKNHMLDSHGKRDFTATVPGTRLVGDITYLKTGSGWLYVATVIDLATRMVVGWSMDSNM
RTPLVINALAMARDHGCLHPEGAIFHSDRGSQYTSEQFQTWCAGNKITQSMGLTGVCWDNGSRGEFFLTFEDRNVSPL

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=115, Percent_Identity=41.7391304347826, Blast_Score=89, Evalue=2e-18,
Organism=Escherichia coli, GI1788405, Length=120, Percent_Identity=41.6666666666667, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1787263, Length=120, Percent_Identity=41.6666666666667, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1786753, Length=120, Percent_Identity=41.6666666666667, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1786570, Length=120, Percent_Identity=41.6666666666667, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1786490, Length=120, Percent_Identity=41.6666666666667, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1789981, Length=121, Percent_Identity=34.7107438016529, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 17556; Mature: 17425

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDECGPGRTPRSVTLSARTEHIKNHMLDSHGKRDFTATVPGTRLVGDITYLKTGSGWLY
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEEECCCEEE
VATVIDLATRMVVGWSMDSNMRTPLVINALAMARDHGCLHPEGAIFHSDRGSQYTSEQFQ
HHHHHHHHHHHHEEECCCCCCCCCCEEHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHH
TWCAGNKITQSMGLTGVCWDNGSRGEFFLTFEDRNVSPL
HHHCCCCCHHHCCCEEEEECCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
SDECGPGRTPRSVTLSARTEHIKNHMLDSHGKRDFTATVPGTRLVGDITYLKTGSGWLY
CCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEEECCCEEE
VATVIDLATRMVVGWSMDSNMRTPLVINALAMARDHGCLHPEGAIFHSDRGSQYTSEQFQ
HHHHHHHHHHHHEEECCCCCCCCCCEEHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHH
TWCAGNKITQSMGLTGVCWDNGSRGEFFLTFEDRNVSPL
HHHCCCCCHHHCCCEEEEECCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]