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The map label for this gene is lytR [H]

Identifier: 62389628

GI number: 62389628

Start: 778628

End: 780184

Strand: Reverse

Name: lytR [H]

Synonym: cg0847

Alternate gene names: 62389628

Gene position: 780184-778628 (Counterclockwise)

Preceding gene: 62389633

Following gene: 62389627

Centisome position: 23.77

GC content: 58.25

Gene sequence:

>1557_bases
GTGACTGAAAAGTATCGTCCCGTCCGTGACATTAAGCCTGCTCCGGCAGCAATGCAATCAACTAAACAAGCGGGCCATCC
TGTGTTCCGAAGCGTTGTCGCTTTTGTTTCAGTGCTGGTGTTGTTGGTATCGGGTTTGGGGTATCTTGCTGTCGGAAAAG
TGGATGGTGTCGCTTCTGGCAACTTGAACCTTGGTGGCGGTCGCGGCATCCAGGACGGCAATGCTGCTGACGGTGCTACC
GATATTTTGTTGGTGGGTTCTGATTCCCGTTCCGATGCTCAGGGCAACACGCTGACTGAGGAGGAGCTGGCGATGCTCCG
CGCAGGCGACGAGGAGAACGACAACACCGATACGATCATGGTGATTCGTGTTCCTAACGATGGTTCCTCTGCCACCGCTG
TGTCGATTCCTCGCGATACCTATATTCATGATGACGATTACGGCAACATGAAGATCAACGGCGTTTACGGTGCGTACAAG
GATGCCCGTCGCGCTGAGCTCATGGAACAGGGTTTCACCAATGAGTCAGAGCTGGAAACCCGGGCGAAGGATGCTGGCCG
AGAAGGTTTGATCGATGCTGTGTCAGATCTCACCGGCATCACCGTCGATCACTACGCCGAAGTTGGCCTTTTGGGATTCG
TCCTGCTCACCGATGCTGTCGGTGGTGTCGAAGTCTGCCTCAACAACGCCGTCGATGAGCCTTTATCCGGCGCCAACTTC
CCTGCAGGCCGTCAAACCCTCGGTGGCTCCGATGCGTTGTCTTATGTGCGCCAGCGCCACGATCTCCCCCGCGGCGACCT
CGACCGCATCGTCCGCCAGCAGTCGTATATGGCATCGCTTGTTAATCAGGTGCTGTCTTCTGGAACACTCACCAACCCTG
CAAAGCTTTCCGCACTTGCTGATGCCGTCACCCGCTCCGTCGTCATCGACGAAGGCTGGGAGATCATGAGCTTTGCCACT
CAGCTGCAGAACCTCGCGGGCGGCAACGTCACATTTGCCACCATCCCGGTTACCTCTATCGACGGCACCGGCGATTACGG
CGAGTCCGTTGTCACCATCGATGTCAACCAGGTGCATGCATTCTTCCAAGAAGCACTCGGCGAAGCAGAGCCAGCTCCAG
AAGACGGCTCCGACGATCAATCTGCTGATCAGGCCCCTGACCTAAGCGAAGTCGAGGTCCACGTCCTCAACGCTTCCTAC
GTCGAAGGCCTCGCCAACGGTATCGCCGCGCAACTGCAGGAATTGGGTTACTCCATCGCAGAGACCGGCAACGCAGCGGA
AGGCCTCTACTACGAGTCCCAGATCCTCGCCGCCGAAGAAGACAGCGCCAAGGCCCTCGCGATTTCCGAAGCCCTCGGCG
GCCTCCCCATCGTGGCCAACTCTTCCCTCGACGACAACACCGTCATCGTCGTATCCGCCGGCGATTACGCTGGCCCTACC
GCGGAAGCAAACGCCGTGACATCCAGCACCGTCGGCCAGCCCGGTGCGGACGTCGGTGAACCGATTGAAAGCCCCGAGTT
CGATGCTGGTGGCGACGGTCCCCGTTGCGTTAACTAA

Upstream 100 bases:

>100_bases
CAAGCAGCCAATGGCCGCGTATGAAAACCCCCGCTCCATAAATACAGAACACATACAGAACTTGACCGACAATCTAATTA
CCGCGAAGGGTTAGCAGCAC

Downstream 100 bases:

>100_bases
AACCCCGCTTTTCGACGCCTCCCCGCAGCCCACCACCGTGGGCTGCGGGGTGTGGCGTTTTTGCCACAAAGTGGACCGTA
TTCGCAAATACTTTGTTAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MTEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASGNLNLGGGRGIQDGNAADGAT
DILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYK
DARRAELMEQGFTNESELETRAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIMSFAT
QLQNLAGGNVTFATIPVTSIDGTGDYGESVVTIDVNQVHAFFQEALGEAEPAPEDGSDDQSADQAPDLSEVEVHVLNASY
VEGLANGIAAQLQELGYSIAETGNAAEGLYYESQILAAEEDSAKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
AEANAVTSSTVGQPGADVGEPIESPEFDAGGDGPRCVN

Sequences:

>Translated_518_residues
MTEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASGNLNLGGGRGIQDGNAADGAT
DILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYK
DARRAELMEQGFTNESELETRAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIMSFAT
QLQNLAGGNVTFATIPVTSIDGTGDYGESVVTIDVNQVHAFFQEALGEAEPAPEDGSDDQSADQAPDLSEVEVHVLNASY
VEGLANGIAAQLQELGYSIAETGNAAEGLYYESQILAAEEDSAKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
AEANAVTSSTVGQPGADVGEPIESPEFDAGGDGPRCVN
>Mature_517_residues
TEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASGNLNLGGGRGIQDGNAADGATD
ILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYKD
ARRAELMEQGFTNESELETRAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANFP
AGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIMSFATQ
LQNLAGGNVTFATIPVTSIDGTGDYGESVVTIDVNQVHAFFQEALGEAEPAPEDGSDDQSADQAPDLSEVEVHVLNASYV
EGLANGIAAQLQELGYSIAETGNAAEGLYYESQILAAEEDSAKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPTA
EANAVTSSTVGQPGADVGEPIESPEFDAGGDGPRCVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 53917; Mature: 53786

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASG
CCCCCCCHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
NLNLGGGRGIQDGNAADGATDILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIM
CEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEE
VIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYKDARRAELMEQGFTNESELET
EEEECCCCCCCEEEECCCCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHH
RAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALA
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
DAVTRSVVIDEGWEIMSFATQLQNLAGGNVTFATIPVTSIDGTGDYGESVVTIDVNQVHA
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEEHHHHHH
FFQEALGEAEPAPEDGSDDQSADQAPDLSEVEVHVLNASYVEGLANGIAAQLQELGYSIA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCHHH
ETGNAAEGLYYESQILAAEEDSAKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
HCCCCCCCCEEECEEEECCCCCCHHEEHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCC
AEANAVTSSTVGQPGADVGEPIESPEFDAGGDGPRCVN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TEKYRPVRDIKPAPAAMQSTKQAGHPVFRSVVAFVSVLVLLVSGLGYLAVGKVDGVASG
CCCCCCHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
NLNLGGGRGIQDGNAADGATDILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIM
CEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEE
VIRVPNDGSSATAVSIPRDTYIHDDDYGNMKINGVYGAYKDARRAELMEQGFTNESELET
EEEECCCCCCCEEEECCCCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHH
RAKDAGREGLIDAVSDLTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANF
HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
PAGRQTLGGSDALSYVRQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALA
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
DAVTRSVVIDEGWEIMSFATQLQNLAGGNVTFATIPVTSIDGTGDYGESVVTIDVNQVHA
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEEHHHHHH
FFQEALGEAEPAPEDGSDDQSADQAPDLSEVEVHVLNASYVEGLANGIAAQLQELGYSIA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCHHH
ETGNAAEGLYYESQILAAEEDSAKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPT
HCCCCCCCCEEECEEEECCCCCCHHEEHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCC
AEANAVTSSTVGQPGADVGEPIESPEFDAGGDGPRCVN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]