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The map label for this gene is ccsB [H]

Identifier: 62389342

GI number: 62389342

Start: 467647

End: 468660

Strand: Direct

Name: ccsB [H]

Synonym: cg0524

Alternate gene names: 62389342

Gene position: 467647-468660 (Clockwise)

Preceding gene: 62389341

Following gene: 62389343

Centisome position: 14.25

GC content: 55.72

Gene sequence:

>1014_bases
ATGTTGCCCGTCAACCAAACGTATGCGCAGTTCTCAGACACTGCCTTCGTATCGGCATACATCATCTACGTTCTGGCACT
CATCCTCTCCCTCGTCTACTACGTAAAACAACAAGGCATTATCGACGCCCGCCGCGAGCAAACCCGCGTCAGCGAACTCG
TTGGTGCAGGCGGCAGCGCTGATGTTGATACTGACCTGCCTGATGACATCGCCGACGGTGTCCTCGCCGACGAAGACCTT
GCAAAACGCGAAGAAACCGCACGCAAACTAGCCAACATGACCCAATCTCTCATGTGGCTCGGCGTCATGGTGCACCTCGT
ATCCGTCGTGATGCGCGCGCTGTCTGCCAGCCGATTCCCCTTCGGCAACCTGTATGAATACATCCTCATGGTCACCCTCT
TCGCCATGATCGGAGCCGTACTCATCCTGCAGCGCCCACAATTCCGCGTGGTATGGCCATGGATCCTCACCCCAATGCTG
GCACTGCTCTTCTACGGTGGCACCCAGCTGTACTCCGACGCAGCACCAGTCGTTCCAGCACTGCAGTCCTTCTGGTTCCC
GATCCACGTTTCCTCCGTCTCCATCGGCGCATCCATCGGTATCGTCTCCGGTATTGCATCCCTGCTGTACCTACTGCGCA
TGTGGCAACCAAAGGGTAAAGAAAAGGGCTTCTTCGGCGCAGTAGCAAAACCACTCCCATCCGGAAAAACCCTGGATAAC
CTGGCATACAAGACCGCGATCTGGACTGTCCCAATCTTCGGCCTGGGCATCATCTTGGGTGCCATCTGGGCAGAAGCAGC
CTGGGGTCGTTTCTGGGGATGGGATCCTAAGGAAACAGTCTCCTTCATCACCTGGGTTCTCTACGCTGGTTACCTCCACG
CACGTGCAACTGCTGGTTGGCGCAACACCAACGCTGCATGGATCAACATCCTGGCGCTGGTCACGATGATTTTTAATCTG
TTCTTCATCAACATGGTCGTATCTGGTCTGCACTCTTACGCCGGACTGAACTAA

Upstream 100 bases:

>100_bases
GAAGAGTACTTCGACCACGACGACTAACACCGCAATTTAAAGGCTTTTCAAGCCTGCCCCACATCGAAGCAGTTTTCACA
AAGAATAAGGTTGGAAAATT

Downstream 100 bases:

>100_bases
GCACTTTTGGTTGGCGGGGTTAGTGAGACCCGCCCTCGTTCTTCATTGAGCGAGGGCGGGTTTGTTGTTTTTTGGGGGCG
CTCATGGATTTAGGGGCATT

Product: cytochrome c assembly membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSADVDTDLPDDIADGVLADEDL
AKREETARKLANMTQSLMWLGVMVHLVSVVMRALSASRFPFGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPML
ALLFYGGTQLYSDAAPVVPALQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGWRNTNAAWINILALVTMIFNL
FFINMVVSGLHSYAGLN

Sequences:

>Translated_337_residues
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSADVDTDLPDDIADGVLADEDL
AKREETARKLANMTQSLMWLGVMVHLVSVVMRALSASRFPFGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPML
ALLFYGGTQLYSDAAPVVPALQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGWRNTNAAWINILALVTMIFNL
FFINMVVSGLHSYAGLN
>Mature_337_residues
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSADVDTDLPDDIADGVLADEDL
AKREETARKLANMTQSLMWLGVMVHLVSVVMRALSASRFPFGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPML
ALLFYGGTQLYSDAAPVVPALQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGWRNTNAAWINILALVTMIFNL
FFINMVVSGLHSYAGLN

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 37272; Mature: 37272

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
DVDTDLPDDIADGVLADEDLAKREETARKLANMTQSLMWLGVMVHLVSVVMRALSASRFP
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPMLALLFYGGTQLYSDAAPVVPA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHCCCCHHHHH
LQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
HHHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHH
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RNTNAAWINILALVTMIFNLFFINMVVSGLHSYAGLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLPVNQTYAQFSDTAFVSAYIIYVLALILSLVYYVKQQGIIDARREQTRVSELVGAGGSA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
DVDTDLPDDIADGVLADEDLAKREETARKLANMTQSLMWLGVMVHLVSVVMRALSASRFP
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FGNLYEYILMVTLFAMIGAVLILQRPQFRVVWPWILTPMLALLFYGGTQLYSDAAPVVPA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHCCCCHHHHH
LQSFWFPIHVSSVSIGASIGIVSGIASLLYLLRMWQPKGKEKGFFGAVAKPLPSGKTLDN
HHHHCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHH
LAYKTAIWTVPIFGLGIILGAIWAEAAWGRFWGWDPKETVSFITWVLYAGYLHARATAGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RNTNAAWINILALVTMIFNLFFINMVVSGLHSYAGLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA