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The map label for this gene is yahB [H]

Identifier: 59714325

GI number: 59714325

Start: 1285199

End: 1286086

Strand: Reverse

Name: yahB [H]

Synonym: VF_A1142

Alternate gene names: 59714325

Gene position: 1286086-1285199 (Counterclockwise)

Preceding gene: 59714327

Following gene: 59714322

Centisome position: 96.67

GC content: 41.55

Gene sequence:

>888_bases
ATGTACAGTTTTGAGCAATTAAAAATTTTTGTCACCGTATGTGAATGCGGTTCTTTCTCGGCTGCGGCTCGCCAATTAAA
ACGTGCTCAATCAGGTGTGAGTCAGGCCATTGCTAATTTAGAAATCTCGATTAACCAAGAGCTGTTTAATCGTGAGAAAA
ATACGCCAGTACTGACAGAGAAGGGTAAGGCTTTATTGCCGATTGCTCAGTCTATTTTGCACCAACAGAAATACTTTGAT
CAAAAGGTTGAGTCGTTAGAAAGAGAGCATGAATATGAGTTGGTTATTGCGATTGATGAGAGCTTAATTAATGATGATTT
ATTGCAAATTTTAGCGACATTGGCGGATAAGTTTCCCGTTACCGATGTTGAAATTATTACGACCTCAACCTTTGATGTTG
AAGATCTGGTTAGAAAGGGAAAAGCACAAGTAGGTATTGTTTATGCTGATGGCGAGCTTAAAGTTGATATGGATTTTTTC
ACCTTAGGACAAATACGTTTTCTTACTGTGGCTGCGCCAGATCATGAATTAGCGGCTTTACCAATGGTGAATGATGCGGC
ATTGAAAGGACATCGACAGTTAGTGCATCGTAGCTCTAAGGGGAAAGAGTTGTGGTTCAGTTATGGGATCAGTTCAAAAT
TATGGTATGCCAATACCCATCAAGCCTTAATCGAGTTAGCGTGCCGTGGTGTGGGTTGGACTATCGTTCCAGAGCATTCG
GTGACAAGTTTCATTGAGGAGAAAAAGTTAGTTGCGCTGCCGATTGCTCATGAGTTTCATGGTTGGTTAACGCCTATGGG
TTGCTTAGTCTCTCGGCGTCACGCATTTGGCCCCGTATTAGAAGATCTATTGTCATCACTGCAAGAGTTAAGTAAGGCGG
TTCATTAA

Upstream 100 bases:

>100_bases
AAGAAGCGCGATTATAAAGAGTGAGTAAAAGAGATAAAGTTAACAGCCATCACAAATCGTGATAGCTTAAGCGCAGGTCT
ACTTACTTGAGCTAAATGTT

Downstream 100 bases:

>100_bases
AGGCTATTTAGTCTCACTCTTTTTAACGGATTAATATTTTGCCTTTCTAATTGTTCTATTTTGAATTTTATTTTTAAAAA
AGACTCTTCACTATCAATTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MYSFEQLKIFVTVCECGSFSAAARQLKRAQSGVSQAIANLEISINQELFNREKNTPVLTEKGKALLPIAQSILHQQKYFD
QKVESLEREHEYELVIAIDESLINDDLLQILATLADKFPVTDVEIITTSTFDVEDLVRKGKAQVGIVYADGELKVDMDFF
TLGQIRFLTVAAPDHELAALPMVNDAALKGHRQLVHRSSKGKELWFSYGISSKLWYANTHQALIELACRGVGWTIVPEHS
VTSFIEEKKLVALPIAHEFHGWLTPMGCLVSRRHAFGPVLEDLLSSLQELSKAVH

Sequences:

>Translated_295_residues
MYSFEQLKIFVTVCECGSFSAAARQLKRAQSGVSQAIANLEISINQELFNREKNTPVLTEKGKALLPIAQSILHQQKYFD
QKVESLEREHEYELVIAIDESLINDDLLQILATLADKFPVTDVEIITTSTFDVEDLVRKGKAQVGIVYADGELKVDMDFF
TLGQIRFLTVAAPDHELAALPMVNDAALKGHRQLVHRSSKGKELWFSYGISSKLWYANTHQALIELACRGVGWTIVPEHS
VTSFIEEKKLVALPIAHEFHGWLTPMGCLVSRRHAFGPVLEDLLSSLQELSKAVH
>Mature_295_residues
MYSFEQLKIFVTVCECGSFSAAARQLKRAQSGVSQAIANLEISINQELFNREKNTPVLTEKGKALLPIAQSILHQQKYFD
QKVESLEREHEYELVIAIDESLINDDLLQILATLADKFPVTDVEIITTSTFDVEDLVRKGKAQVGIVYADGELKVDMDFF
TLGQIRFLTVAAPDHELAALPMVNDAALKGHRQLVHRSSKGKELWFSYGISSKLWYANTHQALIELACRGVGWTIVPEHS
VTSFIEEKKLVALPIAHEFHGWLTPMGCLVSRRHAFGPVLEDLLSSLQELSKAVH

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=183, Percent_Identity=27.3224043715847, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=24.21875, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789639, Length=264, Percent_Identity=25.7575757575758, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693105, Length=217, Percent_Identity=24.8847926267281, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788887, Length=303, Percent_Identity=24.7524752475248, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33030; Mature: 33030

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSFEQLKIFVTVCECGSFSAAARQLKRAQSGVSQAIANLEISINQELFNREKNTPVLTE
CCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCEEEECHHHHCCCCCCCEEEC
KGKALLPIAQSILHQQKYFDQKVESLEREHEYELVIAIDESLINDDLLQILATLADKFPV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCC
TDVEIITTSTFDVEDLVRKGKAQVGIVYADGELKVDMDFFTLGQIRFLTVAAPDHELAAL
CCEEEEEECCCCHHHHHHCCCCEEEEEEECCEEEEEEEEEEECCEEEEEEECCCCCEEEC
PMVNDAALKGHRQLVHRSSKGKELWFSYGISSKLWYANTHQALIELACRGVGWTIVPEHS
CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHCCCCEEEECCHH
VTSFIEEKKLVALPIAHEFHGWLTPMGCLVSRRHAFGPVLEDLLSSLQELSKAVH
HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYSFEQLKIFVTVCECGSFSAAARQLKRAQSGVSQAIANLEISINQELFNREKNTPVLTE
CCCHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCEEEECHHHHCCCCCCCEEEC
KGKALLPIAQSILHQQKYFDQKVESLEREHEYELVIAIDESLINDDLLQILATLADKFPV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCC
TDVEIITTSTFDVEDLVRKGKAQVGIVYADGELKVDMDFFTLGQIRFLTVAAPDHELAAL
CCEEEEEECCCCHHHHHHCCCCEEEEEEECCEEEEEEEEEEECCEEEEEEECCCCCEEEC
PMVNDAALKGHRQLVHRSSKGKELWFSYGISSKLWYANTHQALIELACRGVGWTIVPEHS
CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHCCCCEEEECCHH
VTSFIEEKKLVALPIAHEFHGWLTPMGCLVSRRHAFGPVLEDLLSSLQELSKAVH
HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]