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The map label for this gene is nahR [H]

Identifier: 59714146

GI number: 59714146

Start: 1084109

End: 1085041

Strand: Reverse

Name: nahR [H]

Synonym: VF_A0963

Alternate gene names: 59714146

Gene position: 1085041-1084109 (Counterclockwise)

Preceding gene: 59714154

Following gene: 59714143

Centisome position: 81.56

GC content: 35.69

Gene sequence:

>933_bases
ATGGATCTTATTCAACTTTCTCGTATTAGTTTTAAGCATTTGACGGCTTTGCATATTATGCTTTCGACTCACAGTGTTAC
TAAAAGTGCTGAAACACTATGCATGAGTCCATCCAGTGTCAGTAAAACATTAACTCAACTACGAAAGGTATTGAATGATG
AATTGTTTTATCGAGATGGAACACAGCTAATTCCAACACCTTATGCCGTGAAAATAGGACCAACGGTTCATTTGATTTTA
AATAATATGAATGGCCTGCTTAACCAATCTACGTTTGATCCGGCATTGTTTTCTGGTCGTTTTTCTCTTTCTATGCGAGA
AAGTACTCTTGAAGTTTTTGCTCCTGTTATTAGCGATATTTTGTCAAATCAAGCGACAAATGCTCAAATAAATATTCATT
CAAAGGAGCAATTGGGGTTTGATGCATTACTTAATGGGCAAGTTGACCTGATTATTTTACCTCATGATAAGAGTCAGCCA
CCGACAAATGAAAAGCAGCTAGTATGGGAAAGTGTTATCGAAGATGAGATGGTTTGTTTAATGCGAGAGGATCATCCTTT
AGCAAAAGATGAATTAACTATTGAAGATTATCTTTCTTATAAACACATAGGTATTTTTGATAAAGAACTTAATAAGCCTT
ATTTTGAACAGCTACTAACACAACAGCATCAGTCTAGAACGATGGCGATGTTCGTTGCTGATTTCGGTAGCGCAGCAGCT
ATGTGTCAGCAATCTGATTTTTTATTTACAAGTTCAAAAAAGTGGTTTGAAGTGACAAAACAAGCGCAAGGATTAGTTCA
AAAAACATTGCCATTTGGTTATGGTCAAGTCGCTTATAGCGTGGTTTATAATAAGCTGAGTTTGAATGATCAAGCATTGA
GTTGGTTGTTGAATCGCATAAAAGAACAAGTAAGCGATATAACATTCGAATGA

Upstream 100 bases:

>100_bases
AAAGAGTAAGGTGATGGATGGTAAAGGATGTCATTTGTCATTTCAACTACAAAATGTTTTATAATGTGTATTCTCGGTTA
ATTCTTATTTGTGGACACTA

Downstream 100 bases:

>100_bases
TGTTACTAAAGGCTTAAATAATCGTTATTTAGCCGCAGTATTTTCAAAATAACTATAAAAAAATAGCCAACACAAGGGGG
ATGGTGTTGGCTATTTGTAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDLIQLSRISFKHLTALHIMLSTHSVTKSAETLCMSPSSVSKTLTQLRKVLNDELFYRDGTQLIPTPYAVKIGPTVHLIL
NNMNGLLNQSTFDPALFSGRFSLSMRESTLEVFAPVISDILSNQATNAQINIHSKEQLGFDALLNGQVDLIILPHDKSQP
PTNEKQLVWESVIEDEMVCLMREDHPLAKDELTIEDYLSYKHIGIFDKELNKPYFEQLLTQQHQSRTMAMFVADFGSAAA
MCQQSDFLFTSSKKWFEVTKQAQGLVQKTLPFGYGQVAYSVVYNKLSLNDQALSWLLNRIKEQVSDITFE

Sequences:

>Translated_310_residues
MDLIQLSRISFKHLTALHIMLSTHSVTKSAETLCMSPSSVSKTLTQLRKVLNDELFYRDGTQLIPTPYAVKIGPTVHLIL
NNMNGLLNQSTFDPALFSGRFSLSMRESTLEVFAPVISDILSNQATNAQINIHSKEQLGFDALLNGQVDLIILPHDKSQP
PTNEKQLVWESVIEDEMVCLMREDHPLAKDELTIEDYLSYKHIGIFDKELNKPYFEQLLTQQHQSRTMAMFVADFGSAAA
MCQQSDFLFTSSKKWFEVTKQAQGLVQKTLPFGYGQVAYSVVYNKLSLNDQALSWLLNRIKEQVSDITFE
>Mature_310_residues
MDLIQLSRISFKHLTALHIMLSTHSVTKSAETLCMSPSSVSKTLTQLRKVLNDELFYRDGTQLIPTPYAVKIGPTVHLIL
NNMNGLLNQSTFDPALFSGRFSLSMRESTLEVFAPVISDILSNQATNAQINIHSKEQLGFDALLNGQVDLIILPHDKSQP
PTNEKQLVWESVIEDEMVCLMREDHPLAKDELTIEDYLSYKHIGIFDKELNKPYFEQLLTQQHQSRTMAMFVADFGSAAA
MCQQSDFLFTSSKKWFEVTKQAQGLVQKTLPFGYGQVAYSVVYNKLSLNDQALSWLLNRIKEQVSDITFE

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=295, Percent_Identity=24.406779661017, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35114; Mature: 35114

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLIQLSRISFKHLTALHIMLSTHSVTKSAETLCMSPSSVSKTLTQLRKVLNDELFYRDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHEECCC
TQLIPTPYAVKIGPTVHLILNNMNGLLNQSTFDPALFSGRFSLSMRESTLEVFAPVISDI
CEECCCCEEEEECCEEEEEEEHHHHHCCCCCCCHHHHCCEEEEEHHHHHHHHHHHHHHHH
LSNQATNAQINIHSKEQLGFDALLNGQVDLIILPHDKSQPPTNEKQLVWESVIEDEMVCL
HCCCCCCCEEEECCHHHCCHHHEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEE
MREDHPLAKDELTIEDYLSYKHIGIFDKELNKPYFEQLLTQQHQSRTMAMFVADFGSAAA
ECCCCCCCCCCCCHHHHHCHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
MCQQSDFLFTSSKKWFEVTKQAQGLVQKTLPFGYGQVAYSVVYNKLSLNDQALSWLLNRI
HHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
KEQVSDITFE
HHHHHHCCCC
>Mature Secondary Structure
MDLIQLSRISFKHLTALHIMLSTHSVTKSAETLCMSPSSVSKTLTQLRKVLNDELFYRDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHEECCC
TQLIPTPYAVKIGPTVHLILNNMNGLLNQSTFDPALFSGRFSLSMRESTLEVFAPVISDI
CEECCCCEEEEECCEEEEEEEHHHHHCCCCCCCHHHHCCEEEEEHHHHHHHHHHHHHHHH
LSNQATNAQINIHSKEQLGFDALLNGQVDLIILPHDKSQPPTNEKQLVWESVIEDEMVCL
HCCCCCCCEEEECCHHHCCHHHEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEE
MREDHPLAKDELTIEDYLSYKHIGIFDKELNKPYFEQLLTQQHQSRTMAMFVADFGSAAA
ECCCCCCCCCCCCHHHHHCHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
MCQQSDFLFTSSKKWFEVTKQAQGLVQKTLPFGYGQVAYSVVYNKLSLNDQALSWLLNRI
HHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
KEQVSDITFE
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]