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The map label for this gene is tcpD [H]

Identifier: 59714053

GI number: 59714053

Start: 982491

End: 983270

Strand: Reverse

Name: tcpD [H]

Synonym: VF_A0870

Alternate gene names: 59714053

Gene position: 983270-982491 (Counterclockwise)

Preceding gene: 59714054

Following gene: 59714052

Centisome position: 73.91

GC content: 24.87

Gene sequence:

>780_bases
GTGGTTATTTTAGACAACATTAAAAATAAACAGAATAGAATTGTAGTCATCATTTCTTTTTTTTTGATCTCTTTAATATT
AGTGTTAAGCTTTATTTTCTTTAATAAATATAAAGAAAATGAAAAGATACGAAAATTTCAAGAACAAAAAAGAGTTGAAG
AAACTAATGACCGTGATATGTATATTTCAACATTAGATAATTTTAATTCTTCTTTTAGTATTCAGAACTTTCGGGAAATA
TATGATGACTTATACAGAGACAAAGTATTTTTTCATCCTTTAGGGTGGATTCAGAATGAAGTGTACTGTAATGGAAATGA
ATGTAATATAAAATATATTAGAAGCGAGCCAGATGCTTTTAATTATGTTGTGTTAACTAAGAATAATTTAGATTATCCCC
CGGCTTTTAATAAAAATGAGCTGAATTATGAGTCTGTATTTTTTGATTTTAGTGAAAATAAAAAAATTTTAAAAGATAAA
GTCAACTATGCGAACTGTACTGATATTTTATCAAAAGCGTATAGGTTTGATACGATGATAAATTCAATTGGTTCTAACCT
AGAAGTATTATCTCCATCAAATGTATTCTTAATAAATAAAGAATATGAATGGATGGAGTATAAAAACTTAATGCAGGGTC
AACTTATTCTAAATACATCTGAATTCCAATCTCTTGATTTAATAGATGATTTTTTTAATGGTGATTTTGTAACCTATGGT
GAAATGAATTTAAGAAATAATGATGCAACAATCTATTTTAATTATTTATGTTTAAATTAA

Upstream 100 bases:

>100_bases
TCGATGAAGCTGATATTAAAATAAGAAAATATTATGGCTTTTATCCATTGTTAATTAGTATTTCATTCTTAATCTTATTT
TTATTAGTTGGAGCTTGGTT

Downstream 100 bases:

>100_bases
GGATTATGTAATTATGAAATATATATTGATTTTTTGTGCTTCTTTTTTGTCTATGAATAATGTTTTTGCAGATGAACTTT
CTGTTTTTGAAAATAATTAT

Product: toxin coregulated pilus biosynthesis protein TcpD

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpD [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MVILDNIKNKQNRIVVIISFFLISLILVLSFIFFNKYKENEKIRKFQEQKRVEETNDRDMYISTLDNFNSSFSIQNFREI
YDDLYRDKVFFHPLGWIQNEVYCNGNECNIKYIRSEPDAFNYVVLTKNNLDYPPAFNKNELNYESVFFDFSENKKILKDK
VNYANCTDILSKAYRFDTMINSIGSNLEVLSPSNVFLINKEYEWMEYKNLMQGQLILNTSEFQSLDLIDDFFNGDFVTYG
EMNLRNNDATIYFNYLCLN

Sequences:

>Translated_259_residues
MVILDNIKNKQNRIVVIISFFLISLILVLSFIFFNKYKENEKIRKFQEQKRVEETNDRDMYISTLDNFNSSFSIQNFREI
YDDLYRDKVFFHPLGWIQNEVYCNGNECNIKYIRSEPDAFNYVVLTKNNLDYPPAFNKNELNYESVFFDFSENKKILKDK
VNYANCTDILSKAYRFDTMINSIGSNLEVLSPSNVFLINKEYEWMEYKNLMQGQLILNTSEFQSLDLIDDFFNGDFVTYG
EMNLRNNDATIYFNYLCLN
>Mature_259_residues
MVILDNIKNKQNRIVVIISFFLISLILVLSFIFFNKYKENEKIRKFQEQKRVEETNDRDMYISTLDNFNSSFSIQNFREI
YDDLYRDKVFFHPLGWIQNEVYCNGNECNIKYIRSEPDAFNYVVLTKNNLDYPPAFNKNELNYESVFFDFSENKKILKDK
VNYANCTDILSKAYRFDTMINSIGSNLEVLSPSNVFLINKEYEWMEYKNLMQGQLILNTSEFQSLDLIDDFFNGDFVTYG
EMNLRNNDATIYFNYLCLN

Specific function: Involved in TCP pilus biogenesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30915; Mature: 30915

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILDNIKNKQNRIVVIISFFLISLILVLSFIFFNKYKENEKIRKFQEQKRVEETNDRDM
CEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEE
YISTLDNFNSSFSIQNFREIYDDLYRDKVFFHPLGWIQNEVYCNGNECNIKYIRSEPDAF
EEEEHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCEEEEEEEECCCCCE
NYVVLTKNNLDYPPAFNKNELNYESVFFDFSENKKILKDKVNYANCTDILSKAYRFDTMI
EEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH
NSIGSNLEVLSPSNVFLINKEYEWMEYKNLMQGQLILNTSEFQSLDLIDDFFNGDFVTYG
HHHCCCEEEECCCCEEEECCCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCEEEEE
EMNLRNNDATIYFNYLCLN
EEEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MVILDNIKNKQNRIVVIISFFLISLILVLSFIFFNKYKENEKIRKFQEQKRVEETNDRDM
CEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEE
YISTLDNFNSSFSIQNFREIYDDLYRDKVFFHPLGWIQNEVYCNGNECNIKYIRSEPDAF
EEEEHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCEEEEEEEECCCCCE
NYVVLTKNNLDYPPAFNKNELNYESVFFDFSENKKILKDKVNYANCTDILSKAYRFDTMI
EEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH
NSIGSNLEVLSPSNVFLINKEYEWMEYKNLMQGQLILNTSEFQSLDLIDDFFNGDFVTYG
HHHCCCEEEECCCCEEEECCCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCEEEEE
EMNLRNNDATIYFNYLCLN
EEEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8097178; 10952301 [H]