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The map label for this gene is exbD2 [H]

Identifier: 59713960

GI number: 59713960

Start: 870755

End: 871159

Strand: Reverse

Name: exbD2 [H]

Synonym: VF_A0777

Alternate gene names: 59713960

Gene position: 871159-870755 (Counterclockwise)

Preceding gene: 59713961

Following gene: 59713959

Centisome position: 65.48

GC content: 40.49

Gene sequence:

>405_bases
ATGAGACTCGGAAGACGTGATACAAAAACAGAAGAAGCACAAATCGATCTTACTTCCATGTTGGATATCGTATTTATTAT
GTTGATCTTTTTCATTGTAACCAGTTCGTTTGTACGTGAATCAGGGGTTGAGGTAAATCGACCAGAAGCATCGAATGTGG
TTAGCCAGAAAGACGCAGGCATATTTGTTGCGATTAATTCATCAAATGACATTTATATCGATAAGAGAGTAGTAGACGTA
GAGCGTGTGCAAGCCACTCTTGAGCATTTGCTATTAGAGCAACCTGAAGCCTCATTAGTGATTCAAGCTGACGAACATGC
TTATAACGGAACGGTTGTAAAAGTAATGGATGCTGCAAAAGGTGCTGGTGTTAAGCAAATCGCATTAGCAGCGGAGAAGC
GATAA

Upstream 100 bases:

>100_bases
GAATGGTTGCAGCACTAGCTGGCTTATTTGTTCACGCTCGACTTTCAAAGACCTGCCGTTTACGTGAATTAAAACTTGAA
AAATCATTAAGGAGTCCGAA

Downstream 100 bases:

>100_bases
TGTTTAGGTTATTAATGGCGTTGCCAATTGCTGTTGCCATTAGTATTGCTTTGTTTTCTTTAATGGCATGGATGGTTGAT
AATGGTAATCAAGCAAAGCC

Product: TonB system transport protein ExbD2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MRLGRRDTKTEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPEASNVVSQKDAGIFVAINSSNDIYIDKRVVDV
ERVQATLEHLLLEQPEASLVIQADEHAYNGTVVKVMDAAKGAGVKQIALAAEKR

Sequences:

>Translated_134_residues
MRLGRRDTKTEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPEASNVVSQKDAGIFVAINSSNDIYIDKRVVDV
ERVQATLEHLLLEQPEASLVIQADEHAYNGTVVKVMDAAKGAGVKQIALAAEKR
>Mature_134_residues
MRLGRRDTKTEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPEASNVVSQKDAGIFVAINSSNDIYIDKRVVDV
ERVQATLEHLLLEQPEASLVIQADEHAYNGTVVKVMDAAKGAGVKQIALAAEKR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14805; Mature: 14805

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGRRDTKTEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPEASNVVSQKDAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC
IFVAINSSNDIYIDKRVVDVERVQATLEHLLLEQPEASLVIQADEHAYNGTVVKVMDAAK
EEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCC
GAGVKQIALAAEKR
CCCHHHHHHCCCCC
>Mature Secondary Structure
MRLGRRDTKTEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPEASNVVSQKDAG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC
IFVAINSSNDIYIDKRVVDVERVQATLEHLLLEQPEASLVIQADEHAYNGTVVKVMDAAK
EEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCC
GAGVKQIALAAEKR
CCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]