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The map label for this gene is yijO [H]

Identifier: 59713891

GI number: 59713891

Start: 793340

End: 794197

Strand: Reverse

Name: yijO [H]

Synonym: VF_A0708

Alternate gene names: 59713891

Gene position: 794197-793340 (Counterclockwise)

Preceding gene: 172087812

Following gene: 59713890

Centisome position: 59.7

GC content: 39.63

Gene sequence:

>858_bases
ATGGATTTAGTATTTAATACCGTTTTAGAGGCCTTGTTGGCTGAGAGGGAAAGCTTTAATCAGATCTGGTTTGCTGGAGA
TAAAGTAACGCCTCCCGCATGTTGTTATCAGGTAAACTTTCCTCGTCTAGAATTGGTGATTAGTGGTGAATACCGAAATC
AAATAGAAGATCCCGAATTTGGCATTACTGAAGTTAAAGTCATGGCTGGTGACGCCTTGTATATCCCACCGAACTGCTGG
AACAAGCCAGATTGGAGTGAGGATTGCTCTGTACTTAGTTTGCTCTTTGGTCGCAGACAAGTTGGATTTAGCTTAGTGAG
TAAGCGTAAAGGGGAAGAGGGGTTTTACGACGTACAAAAGTACAGTATTCAGACTCGTACAGGTCATGCTATTGATAATA
TTTTAGAAGCGCTAAATGCGTTAGCCCGCGAACCAAACAAAAAGCAGATCGACGAATATCTGCTTCTTGCGTTACTCAGT
TACAGTAAATCCATGTTAGGTGAGCCAAGTGAAGCGGTGTCGCCTAAAAAGCGCAGTGAGGACTTGTATCAAGGTATCTG
TATTTATATTCAAGAGAATTTCCATAAAAGCATAGATAGAACCACGATTGCGAATCGTTTTAATATTTCACCAAACCATT
TATCGCGTATGTTTAGACAACAAGGACATATGACATTGGCTGATTATATAACATGGGTGAGAATTGAACGCGCTAAGTTT
ATGCTAAAGAAATACACCTTCCGTTTAACTGAGGTAGCAACACGTTGTGGCTTTCAAGATGTGAACTATTTTTATCGTGT
ATTTAAGAATAAAACCAGTTATACCCCTTCTGATTATAGAGCGATGGTAAAAGTATAA

Upstream 100 bases:

>100_bases
ATTGCTTGGTGTGTTTCTCATTGTTGTTTTTATCAATAGTAATCATGCACTTGATTATTAAAGTGGATAAAAATGCGGTT
ATTTTCGTAAAGTGGTTATC

Downstream 100 bases:

>100_bases
AATAATCACTCACAACGACTATCTATAGAGTTTCACTTATGTATCATGTGAGAAAAGGAAGTGATTCATAAAGGATGATG
TGTGAGTTGGATATTATTTA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MDLVFNTVLEALLAERESFNQIWFAGDKVTPPACCYQVNFPRLELVISGEYRNQIEDPEFGITEVKVMAGDALYIPPNCW
NKPDWSEDCSVLSLLFGRRQVGFSLVSKRKGEEGFYDVQKYSIQTRTGHAIDNILEALNALAREPNKKQIDEYLLLALLS
YSKSMLGEPSEAVSPKKRSEDLYQGICIYIQENFHKSIDRTTIANRFNISPNHLSRMFRQQGHMTLADYITWVRIERAKF
MLKKYTFRLTEVATRCGFQDVNYFYRVFKNKTSYTPSDYRAMVKV

Sequences:

>Translated_285_residues
MDLVFNTVLEALLAERESFNQIWFAGDKVTPPACCYQVNFPRLELVISGEYRNQIEDPEFGITEVKVMAGDALYIPPNCW
NKPDWSEDCSVLSLLFGRRQVGFSLVSKRKGEEGFYDVQKYSIQTRTGHAIDNILEALNALAREPNKKQIDEYLLLALLS
YSKSMLGEPSEAVSPKKRSEDLYQGICIYIQENFHKSIDRTTIANRFNISPNHLSRMFRQQGHMTLADYITWVRIERAKF
MLKKYTFRLTEVATRCGFQDVNYFYRVFKNKTSYTPSDYRAMVKV
>Mature_285_residues
MDLVFNTVLEALLAERESFNQIWFAGDKVTPPACCYQVNFPRLELVISGEYRNQIEDPEFGITEVKVMAGDALYIPPNCW
NKPDWSEDCSVLSLLFGRRQVGFSLVSKRKGEEGFYDVQKYSIQTRTGHAIDNILEALNALAREPNKKQIDEYLLLALLS
YSKSMLGEPSEAVSPKKRSEDLYQGICIYIQENFHKSIDRTTIANRFNISPNHLSRMFRQQGHMTLADYITWVRIERAKF
MLKKYTFRLTEVATRCGFQDVNYFYRVFKNKTSYTPSDYRAMVKV

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=279, Percent_Identity=33.6917562724014, Blast_Score=174, Evalue=4e-45,
Organism=Escherichia coli, GI1790391, Length=273, Percent_Identity=35.5311355311355, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI171474011, Length=108, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790339, Length=95, Percent_Identity=27.3684210526316, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33091; Mature: 33091

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVFNTVLEALLAERESFNQIWFAGDKVTPPACCYQVNFPRLELVISGEYRNQIEDPEF
CCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCEEEEEEECHHHCCCCCCCC
GITEVKVMAGDALYIPPNCWNKPDWSEDCSVLSLLFGRRQVGFSLVSKRKGEEGFYDVQK
CCEEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
YSIQTRTGHAIDNILEALNALAREPNKKQIDEYLLLALLSYSKSMLGEPSEAVSPKKRSE
HEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHH
DLYQGICIYIQENFHKSIDRTTIANRFNISPNHLSRMFRQQGHMTLADYITWVRIERAKF
HHHHHHHHEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
MLKKYTFRLTEVATRCGFQDVNYFYRVFKNKTSYTPSDYRAMVKV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHEEECC
>Mature Secondary Structure
MDLVFNTVLEALLAERESFNQIWFAGDKVTPPACCYQVNFPRLELVISGEYRNQIEDPEF
CCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCEEEEEEECHHHCCCCCCCC
GITEVKVMAGDALYIPPNCWNKPDWSEDCSVLSLLFGRRQVGFSLVSKRKGEEGFYDVQK
CCEEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
YSIQTRTGHAIDNILEALNALAREPNKKQIDEYLLLALLSYSKSMLGEPSEAVSPKKRSE
HEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHH
DLYQGICIYIQENFHKSIDRTTIANRFNISPNHLSRMFRQQGHMTLADYITWVRIERAKF
HHHHHHHHEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
MLKKYTFRLTEVATRCGFQDVNYFYRVFKNKTSYTPSDYRAMVKV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]