Click here to switch to the map view.

The map label for this gene is ohrR [H]

Identifier: 59713517

GI number: 59713517

Start: 371218

End: 371736

Strand: Reverse

Name: ohrR [H]

Synonym: VF_A0334

Alternate gene names: 59713517

Gene position: 371736-371218 (Counterclockwise)

Preceding gene: 172087800

Following gene: 59713516

Centisome position: 27.94

GC content: 34.3

Gene sequence:

>519_bases
ATGAAATACAAGTATATTGTGCACAATCTATTTTTATTTAAAGAGGCATCAATGGAAAAACAAAACAAAACACAAGATAA
AAATAATATTGATTCCCCTCAATTATTACTTAAGAATCAAGTATGTTTCTCTTTATACAGCGCATCTAATGCCATGATCA
GAGCCTATCGTCCATTACTCAATACATTGGATCTTACCTATCCTCAATATCTCGCAATGATGGTTATTTGGGAAAAAAAT
GGCATTAATGTAAAAGATCTAGGACATGATCTACACCTTGACTCTGGCACCCTAACCCCTTTACTTAAGCGATTAGAATC
AAAAGGGATAGTCACAAGGGAGCGCAGCAAAGAAGACGAACGCATCCGTTTGGTTTTCCTTACAAAACAAGGTATTGAAC
TAAAAAACAAAGCCCTATCTGTACCTAACGGTATTTTTTGTAAAAGCCAATTACAACTTGAAGAACTGCAACAATTAAAA
GCGACCTGTGAAAAGCTATTAGCAAATCTAGAAAAATAA

Upstream 100 bases:

>100_bases
TGATGGTGCCCCTTTATTCTAAATTCTATTTAATCTATAAAAATTGTCAGTAATTAGATTGTGTGCAACTTAATTTCCTT
CAGTATATGTCGATTCTTAA

Downstream 100 bases:

>100_bases
TATTAATGCATACAGTTTAAGTCATAACTGTATGCTTCCCTCCTCTTGAAGTTAAGCCTTAGTCCAAAAATCATTAAAAA
TCTACAAATCAAGTGTAAAA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKYKYIVHNLFLFKEASMEKQNKTQDKNNIDSPQLLLKNQVCFSLYSASNAMIRAYRPLLNTLDLTYPQYLAMMVIWEKN
GINVKDLGHDLHLDSGTLTPLLKRLESKGIVTRERSKEDERIRLVFLTKQGIELKNKALSVPNGIFCKSQLQLEELQQLK
ATCEKLLANLEK

Sequences:

>Translated_172_residues
MKYKYIVHNLFLFKEASMEKQNKTQDKNNIDSPQLLLKNQVCFSLYSASNAMIRAYRPLLNTLDLTYPQYLAMMVIWEKN
GINVKDLGHDLHLDSGTLTPLLKRLESKGIVTRERSKEDERIRLVFLTKQGIELKNKALSVPNGIFCKSQLQLEELQQLK
ATCEKLLANLEK
>Mature_172_residues
MKYKYIVHNLFLFKEASMEKQNKTQDKNNIDSPQLLLKNQVCFSLYSASNAMIRAYRPLLNTLDLTYPQYLAMMVIWEKN
GINVKDLGHDLHLDSGTLTPLLKRLESKGIVTRERSKEDERIRLVFLTKQGIELKNKALSVPNGIFCKSQLQLEELQQLK
ATCEKLLANLEK

Specific function: Organic peroxide sensor. Represses the expression of the peroxide-inducible gene ohrA by cooperative binding to two inverted repeat elements [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 19901; Mature: 19901

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKYIVHNLFLFKEASMEKQNKTQDKNNIDSPQLLLKNQVCFSLYSASNAMIRAYRPLL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NTLDLTYPQYLAMMVIWEKNGINVKDLGHDLHLDSGTLTPLLKRLESKGIVTRERSKEDE
HHHCCCCHHHHHHHEEECCCCCCHHHCCCEEECCCCCHHHHHHHHHHCCCEECCCCCCCC
RIRLVFLTKQGIELKNKALSVPNGIFCKSQLQLEELQQLKATCEKLLANLEK
EEEEEEEECCCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYKYIVHNLFLFKEASMEKQNKTQDKNNIDSPQLLLKNQVCFSLYSASNAMIRAYRPLL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NTLDLTYPQYLAMMVIWEKNGINVKDLGHDLHLDSGTLTPLLKRLESKGIVTRERSKEDE
HHHCCCCHHHHHHHEEECCCCCCHHHCCCEEECCCCCHHHHHHHHHHCCCEECCCCCCCC
RIRLVFLTKQGIELKNKALSVPNGIFCKSQLQLEELQQLKATCEKLLANLEK
EEEEEEEECCCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 11418552; 11983871 [H]