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The map label for this gene is ydaM [H]

Identifier: 59713459

GI number: 59713459

Start: 305827

End: 307062

Strand: Reverse

Name: ydaM [H]

Synonym: VF_A0276

Alternate gene names: 59713459

Gene position: 307062-305827 (Counterclockwise)

Preceding gene: 59713460

Following gene: 59713457

Centisome position: 23.08

GC content: 36.49

Gene sequence:

>1236_bases
ATGAAACCAATCCATATAGACTCAATGTATGGCGTCGTTATTCATCGAGATTTCACTCCGCTATTTGTTGATGAAAAATA
CGCACAACTGTTTGGTTTCGAATCAGCTCAAGAGGTGATGAACCTTAGTTCGTTATTCGATATTATCGATCCAAAATACC
ATCAAATAGCCCAACAAGCTTATAATGATGTTATGCAAGGTAAAGAAACACCTAAAGTCCGTTCATACGTTAACCAAGAT
ACTCAAGGCAGAATTTTTTCTGTATTGACTGTCGATCATGTTGTTGAATGGCAAGGGTCGCCTGCACTACAAATTACAGT
AATTGATATGTCAACGATTGATCAGGCTAACCAACAAATCCTTGAGCAGGAGCAGAAATACAAAGATCTTATTTGGCATT
CATTACAAGGCATTCTGGTTCATAGAGATTTCAAACCACTAATGGTAAATCCTGCTTTTGTTGATCTAATAAAAGCAAAC
TCTGTGGCAGAAGTGATGGCATTAGATAGTTTTATGTGTCTTATACCTGAGTACAACCAAAAAAATGCTCGCAATCTATA
TCAACAACTGATCTCAAAAGAATTAACCTCAACCAATGATGTTGTTGAAAACATCTGCTTTGACGGTCAAACTCGTTATT
TTCAACTATTTGAAAGTGTCATTGATTGGGGAGGCCTACCGGCAATACAGACCTCAATTATTGATGTGACTGAAAAATAC
CATCTTGAACGTCAAATAGAATATCAAGCATCACATGATGACTTAACAGGCCTATTTAATCGCAGAGCGATAACTGAAAA
GCTTAACCAAAAAATCATCGATAGTGACACTTGTTCTGAAATCTGCTTGCTCATCGATATTGATGATTTTAAATGGATTA
ATGATCAATTTGGGCACGCTTCAGGTGATGAAGTGATCGTCCGTTTTGCTAATTTATGTAAAAAAGCCGTTGACGAATCG
GGTATTGTCGGTCGCTGGGGGGGAGAAGAATTTATTGTTTTTCTTTCAAATCATAGTTTGAAACAAGCAAAAGCTATTGC
CACAACCATTTTAAAAAAATGTGAATTAGAAGTATATCAATTTTCTGATCATCACCACATCGTAACTGCCAGTATTGGCA
TAAGCCAGTGTCAAACTAGTAATTGTAATATTGAATCCTTGATTCAAACGGCGGACAAGAATATGTATCAAGCGAAACAA
CAAGGGAAAAACCAAATTGTTTCACCTGAGGATTAA

Upstream 100 bases:

>100_bases
GTAGTATCATTACCTATCTCACTAATGTAGCTCGTAAATTTCCCTTATTTCTCATAAAGGTATACCATATAGGTCACTGA
TTCACGTTCTAAGGTATTCC

Downstream 100 bases:

>100_bases
TATTGTCAATTAATAGTATTCAACTGCAATACCGATCTCTTCGGCCAATTGTTGCAGTTGCACTTCATCATCTAGCTTAA
CTGACCATTTTGCACCACTG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MKPIHIDSMYGVVIHRDFTPLFVDEKYAQLFGFESAQEVMNLSSLFDIIDPKYHQIAQQAYNDVMQGKETPKVRSYVNQD
TQGRIFSVLTVDHVVEWQGSPALQITVIDMSTIDQANQQILEQEQKYKDLIWHSLQGILVHRDFKPLMVNPAFVDLIKAN
SVAEVMALDSFMCLIPEYNQKNARNLYQQLISKELTSTNDVVENICFDGQTRYFQLFESVIDWGGLPAIQTSIIDVTEKY
HLERQIEYQASHDDLTGLFNRRAITEKLNQKIIDSDTCSEICLLIDIDDFKWINDQFGHASGDEVIVRFANLCKKAVDES
GIVGRWGGEEFIVFLSNHSLKQAKAIATTILKKCELEVYQFSDHHHIVTASIGISQCQTSNCNIESLIQTADKNMYQAKQ
QGKNQIVSPED

Sequences:

>Translated_411_residues
MKPIHIDSMYGVVIHRDFTPLFVDEKYAQLFGFESAQEVMNLSSLFDIIDPKYHQIAQQAYNDVMQGKETPKVRSYVNQD
TQGRIFSVLTVDHVVEWQGSPALQITVIDMSTIDQANQQILEQEQKYKDLIWHSLQGILVHRDFKPLMVNPAFVDLIKAN
SVAEVMALDSFMCLIPEYNQKNARNLYQQLISKELTSTNDVVENICFDGQTRYFQLFESVIDWGGLPAIQTSIIDVTEKY
HLERQIEYQASHDDLTGLFNRRAITEKLNQKIIDSDTCSEICLLIDIDDFKWINDQFGHASGDEVIVRFANLCKKAVDES
GIVGRWGGEEFIVFLSNHSLKQAKAIATTILKKCELEVYQFSDHHHIVTASIGISQCQTSNCNIESLIQTADKNMYQAKQ
QGKNQIVSPED
>Mature_411_residues
MKPIHIDSMYGVVIHRDFTPLFVDEKYAQLFGFESAQEVMNLSSLFDIIDPKYHQIAQQAYNDVMQGKETPKVRSYVNQD
TQGRIFSVLTVDHVVEWQGSPALQITVIDMSTIDQANQQILEQEQKYKDLIWHSLQGILVHRDFKPLMVNPAFVDLIKAN
SVAEVMALDSFMCLIPEYNQKNARNLYQQLISKELTSTNDVVENICFDGQTRYFQLFESVIDWGGLPAIQTSIIDVTEKY
HLERQIEYQASHDDLTGLFNRRAITEKLNQKIIDSDTCSEICLLIDIDDFKWINDQFGHASGDEVIVRFANLCKKAVDES
GIVGRWGGEEFIVFLSNHSLKQAKAIATTILKKCELEVYQFSDHHHIVTASIGISQCQTSNCNIESLIQTADKNMYQAKQ
QGKNQIVSPED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=207, Percent_Identity=34.7826086956522, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=35.5555555555556, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=32.3863636363636, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=28.6516853932584, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=32.1428571428571, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=32.5, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=186, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=29.4117647058824, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=32.9268292682927, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=32.1212121212121, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=29.2993630573248, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787056, Length=194, Percent_Identity=31.9587628865979, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=162, Percent_Identity=31.4814814814815, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081974, Length=192, Percent_Identity=26.5625, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46914; Mature: 46914

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIHIDSMYGVVIHRDFTPLFVDEKYAQLFGFESAQEVMNLSSLFDIIDPKYHQIAQQA
CCCEEECCEEEEEEECCCCCEEECHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
YNDVMQGKETPKVRSYVNQDTQGRIFSVLTVDHVVEWQGSPALQITVIDMSTIDQANQQI
HHHHHCCCCCCHHHHHHCCCCCCCEEEEEEHHHHHCCCCCCEEEEEEEEHHHHHHHHHHH
LEQEQKYKDLIWHSLQGILVHRDFKPLMVNPAFVDLIKANSVAEVMALDSFMCLIPEYNQ
HHHHHHHHHHHHHHHCCEEEECCCCCEEECHHHHHHHHCCCHHHHHHHHHHHEECCCCCC
KNARNLYQQLISKELTSTNDVVENICFDGQTRYFQLFESVIDWGGLPAIQTSIIDVTEKY
CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HLERQIEYQASHDDLTGLFNRRAITEKLNQKIIDSDTCSEICLLIDIDDFKWINDQFGHA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHCCCC
SGDEVIVRFANLCKKAVDESGIVGRWGGEEFIVFLSNHSLKQAKAIATTILKKCELEVYQ
CCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEE
FSDHHHIVTASIGISQCQTSNCNIESLIQTADKNMYQAKQQGKNQIVSPED
ECCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKPIHIDSMYGVVIHRDFTPLFVDEKYAQLFGFESAQEVMNLSSLFDIIDPKYHQIAQQA
CCCEEECCEEEEEEECCCCCEEECHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
YNDVMQGKETPKVRSYVNQDTQGRIFSVLTVDHVVEWQGSPALQITVIDMSTIDQANQQI
HHHHHCCCCCCHHHHHHCCCCCCCEEEEEEHHHHHCCCCCCEEEEEEEEHHHHHHHHHHH
LEQEQKYKDLIWHSLQGILVHRDFKPLMVNPAFVDLIKANSVAEVMALDSFMCLIPEYNQ
HHHHHHHHHHHHHHHCCEEEECCCCCEEECHHHHHHHHCCCHHHHHHHHHHHEECCCCCC
KNARNLYQQLISKELTSTNDVVENICFDGQTRYFQLFESVIDWGGLPAIQTSIIDVTEKY
CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HLERQIEYQASHDDLTGLFNRRAITEKLNQKIIDSDTCSEICLLIDIDDFKWINDQFGHA
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHCCCC
SGDEVIVRFANLCKKAVDESGIVGRWGGEEFIVFLSNHSLKQAKAIATTILKKCELEVYQ
CCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEE
FSDHHHIVTASIGISQCQTSNCNIESLIQTADKNMYQAKQQGKNQIVSPED
ECCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]