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The map label for this gene is glcB [H]

Identifier: 59713440

GI number: 59713440

Start: 287878

End: 288489

Strand: Reverse

Name: glcB [H]

Synonym: VF_A0257

Alternate gene names: 59713440

Gene position: 288489-287878 (Counterclockwise)

Preceding gene: 59713442

Following gene: 59713437

Centisome position: 21.69

GC content: 35.78

Gene sequence:

>612_bases
ATGCTGATAATTAAATCGGTATTAGATAAAGACTTTTTCGAGGGTACCATTATGGCGATTACCAATATAAACAAAGAAAG
TAATACACAACATGAAACTCCGTTTATGGCTGAAGCTGTTTATGCCGTCGAAAAAATGGAAGCAAAACAAGAAGAGAAAC
AACATCAAATCAAAGGTCTTCTTGACCAATTATTCCCACTAACAAAAGGCTCACATCAAGACGTTACTAACTACTTACTT
GATTATCATCATTTAGTAGTTTTCTTTAAAGATGGTGGTTGCAGTGGATTACGCAATCCAGGAAAATTTGTTGCTTTCAC
AGGACACAGATCATCGCCTGATACTATTTTATTAAAAGACAACAGTGGCAGTCATGTTGAAATTATTTTTGGTCTTCATA
CGCCAGGTAAAGATTCACTGGTTACCATAGCTGATGTAGAAATAGAAACATGCACAACGTTCAGTCAGGACTTTAGCTTA
GCGGCTATGCGTCATTGGATTAGTTTAATAAAGCGTGACAGCAGTTCACACATTAAAGCTCATCAAGTAGATAAAGAATA
TACAGCCAAGAATGGAGATGAATACCAACTTAACAGCTGTTTTAGTCTTTAA

Upstream 100 bases:

>100_bases
ATTCACATTGTTAAGTTTTTGTTGTGAAATTGTAGTTAAAATTAAGCTAAGCTTCAATTTAAGTAAGCAAACAACTCTGA
CCAGTGTGACTTACCTAACA

Downstream 100 bases:

>100_bases
TGAAAAGCCATTTTCACATTGGAAATGGCTGTTTTACCAACCGTATTGATCTAGTACATACTTTGAACGTCTAAATAGAA
GAAGTCGTTGTGTTGTTATT

Product: malate synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLIIKSVLDKDFFEGTIMAITNINKESNTQHETPFMAEAVYAVEKMEAKQEEKQHQIKGLLDQLFPLTKGSHQDVTNYLL
DYHHLVVFFKDGGCSGLRNPGKFVAFTGHRSSPDTILLKDNSGSHVEIIFGLHTPGKDSLVTIADVEIETCTTFSQDFSL
AAMRHWISLIKRDSSSHIKAHQVDKEYTAKNGDEYQLNSCFSL

Sequences:

>Translated_203_residues
MLIIKSVLDKDFFEGTIMAITNINKESNTQHETPFMAEAVYAVEKMEAKQEEKQHQIKGLLDQLFPLTKGSHQDVTNYLL
DYHHLVVFFKDGGCSGLRNPGKFVAFTGHRSSPDTILLKDNSGSHVEIIFGLHTPGKDSLVTIADVEIETCTTFSQDFSL
AAMRHWISLIKRDSSSHIKAHQVDKEYTAKNGDEYQLNSCFSL
>Mature_203_residues
MLIIKSVLDKDFFEGTIMAITNINKESNTQHETPFMAEAVYAVEKMEAKQEEKQHQIKGLLDQLFPLTKGSHQDVTNYLL
DYHHLVVFFKDGGCSGLRNPGKFVAFTGHRSSPDTILLKDNSGSHVEIIFGLHTPGKDSLVTIADVEIETCTTFSQDFSL
AAMRHWISLIKRDSSSHIKAHQVDKEYTAKNGDEYQLNSCFSL

Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]

COG id: COG2225

COG function: function code C; Malate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the malate synthase family. GlcB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011076
- InterPro:   IPR001465
- InterPro:   IPR006253 [H]

Pfam domain/function: PF01274 Malate_synthase [H]

EC number: =2.3.3.9 [H]

Molecular weight: Translated: 22851; Mature: 22851

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIIKSVLDKDFFEGTIMAITNINKESNTQHETPFMAEAVYAVEKMEAKQEEKQHQIKGL
CEEEHHHHCCHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDQLFPLTKGSHQDVTNYLLDYHHLVVFFKDGGCSGLRNPGKFVAFTGHRSSPDTILLKD
HHHHHCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEC
NSGSHVEIIFGLHTPGKDSLVTIADVEIETCTTFSQDFSLAAMRHWISLIKRDSSSHIKA
CCCCEEEEEEEECCCCCCCEEEEEECEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCH
HQVDKEYTAKNGDEYQLNSCFSL
HHCCHHHHCCCCCCEECCCCCCC
>Mature Secondary Structure
MLIIKSVLDKDFFEGTIMAITNINKESNTQHETPFMAEAVYAVEKMEAKQEEKQHQIKGL
CEEEHHHHCCHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDQLFPLTKGSHQDVTNYLLDYHHLVVFFKDGGCSGLRNPGKFVAFTGHRSSPDTILLKD
HHHHHCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEC
NSGSHVEIIFGLHTPGKDSLVTIADVEIETCTTFSQDFSLAAMRHWISLIKRDSSSHIKA
CCCCEEEEEEEECCCCCCCEEEEEECEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCH
HQVDKEYTAKNGDEYQLNSCFSL
HHCCHHHHCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA