| Definition | Vibrio fischeri ES114 chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_006841 |
| Length | 1,330,333 |
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The map label for this gene is dmsA [H]
Identifier: 59713265
GI number: 59713265
Start: 87897
End: 90335
Strand: Reverse
Name: dmsA [H]
Synonym: VF_A0082
Alternate gene names: 59713265
Gene position: 90335-87897 (Counterclockwise)
Preceding gene: 59713268
Following gene: 59713264
Centisome position: 6.79
GC content: 41.86
Gene sequence:
>2439_bases ATGAAATTAAAACAATTGCTAACCCCAAAAATAAGCCGCCGCAGTTTTGTAAAAGGCGGGTCTATATTGGGTGGAATCAC AGCTATTACTAGTGGTATAGCGCTTCCTTTTGCTTCTCGCTCTGCTTCTGCTGCACCACAACCTGCAACGACTGAAGATA AAGTCGTTTGGAGTGCATGTACCGTTAACTGTGGCAGCCGCTGCCCATTACGTATGCATGTGTCTAATGGTGAAATTAAG TGGGTCGAAACCGACAATACTGGTGATGATGAATATGGAAATCACCAAGTAAGAGCTTGTTTACGTGGTCGTTCAATGCG TCGACGTGTTTATAATCCTGACCGTTTAAAATACCCAATGAAGCGCATTGGTGCTCGTGGTGAAGGTAAATTTAAGCGTA TTAGCTGGGATGAAGCTTTTACTGAAATTGCAGACAACATTAACCGTATTAAAAAAGAATATGGTAACGAAGCAATTTAC CTAAACTACGGGACAGGTACTCTAGGTGGTACTGTTACTAAGTCTTGGCCTCCAGGCGGCAGTTTGATTGCTCGCTTAAT GAATTTAAACGGCGGTTATCTTAACCACTATGGTGATTACTCAACGGCACAAATTGCAGAAGGTTTAAACCATACTTACG GTGGTTTTGCTGCTAATAACTCGCCATCAGATTTAGAAAATACTAAATTAATTGTTCAATTTGGTAATAACCCTGCTGAA ACTCGCATGTCTGGTGGCGGTGTTATCCATCATTTCATGGAAGGTAAAGCAAAATCTAACGCTCGCATGATCGTTATCGA CCCGCGTTATACTGATACCGCTGGTGGTCGTGAAGATCAGTGGATCCCTATTCGTCCAGGAACCGATACAGCTTTCATTG CTGCGATGGCTCACGTCATGATCAAAGAAGACTTAGTTGATCAAGCCTTCCTTGATAAATATTGTGTTGGTTACGATGAA AAAACACTTCCAGCATCAGCGCCTGCAAATAGTGATTATAAGTCTTATATTTTAGGTCTTGGTGGTGATAATACTGAAAA GACACCAAAATGGGCGTCAACAATTACTGGTATTCCTGAAGACATTATCATTAAAACTGCTCGTGAAATCGGTTCAACAA AACCGTGTGCAATTATCCAAGGCTGGGGCTTACAACGTACCGCTAATGGTGAAATTGCTTCTCGTGCAATCTCTATGCTA GCACTTCTAACGGGTAATGTTGGTATTAACGGCGGTGGTACTGGTGCTCGTGAAGGTAGCTCAAGTATTCCATTTGTTCG CTTCCCAACGCTTAGTAACCCAGTTGAAGCCTCTATTCCAATGTTCTTATGGACAGATGCAATCGTTCGTGGCCCTGAAA TGACAGCAACGAAAGATGGTATCCGAGGAAAAGAAAAACTGGATGTGCCAATCAAGTTCATTTGGAACTACGCTGGTAAC TGTATTATTAACCAACATGCTGATATCAACCGTACGCATACTATCTTACAAGATGACAGCACCTGTGAAATGATCGTGGT TATTGATAACCACATGACATCATCTGCAAAATACGCGGATATCGTTCTACCTGATCTAACCACCTCTGAGCAATCTGATT TCTGTATGGATGCGTCTGCAGGTAACATGCCTTACTTTATCTTTGCTTCTCAAGCGATCAAACCTCAATTTGAAGCTAGA AGTATTTATGATATTTGTACCGGCCTTGCTGATAAATTAGGTGTGAAAGAAGCATTTACTGAAGGTCGAGACCAAGAAGG TTGGCTACGTCACCTCTACCAATTAACACGAGCTCAAGATCCAAGCTTGCCTGAATTTGATGCTATGCGTGAACAAGGTA TTTATAAGCGTAAAGTTGACGAACATTTCGTTGCTTATAAAGAGTTCCGTAAAGATCCTGAAGCCAATCCGCTTAAAACA CCAACAGGAAAAATCGAGATTTATTCTGAAAAACTGGCTGAATTAGCAAGTACGTGGACACTAAAAAAAGACGAAGTTAT TCACCCTCTTCCAATTTATGTACCTAACTTTGAAGGCTATGAAGAATCAAAAACGGGTAATTACCCACTTCAATTAACCG GATTCCACTATAAAGCTCGAGCTCACTCAACCTATGGAAATGTAAGCATTCTAAAAGATGCAGCACCTCAAGAGATGTGG ATTAACCCAATGGATGCTCAGCAACGTGGCATTAACAATGGTGATTTAATCCGTATCTTTAATGATCGTGGTGAAGTTCA TATCGCGGCAAAAGTGACCCCTCGTATGATGCCGGGCGTAGTTGCTCTTGGCGAAGGTGGTTGGTATGCCCCTGATGGTC AAAGAGTTGATCACGGCGGTTGTATTAACGTACTAACAACTCAACGTCCAAGTCCGTTAGCAAAAGGTAATCCGCAACAT ACGAACTTAGTAGATGTGCAACTGGTTAAGAAGGCATAA
Upstream 100 bases:
>100_bases ATTATGTGAATAACTACCCATTGAGAGGTAGTAATCGTAATGATAATAATTTCCATCGGAACATATCAATTCCAAGATAT AACTTAGAGAATGTCGATAC
Downstream 100 bases:
>100_bases GGGTTAAATAATGAAACAATACGGTTTTTATATTGATTCAAGTAAGTGTACTGGTTGTAAAACATGCCAACTTTCTTGTA AAGATAACAAAGACTTGGAT
Product: dimethyl sulfoxide reductase, anaerobic, subunit A
Products: Reduced form of N-Oxide compounds [C]
Alternate protein names: DMSO reductase [H]
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MKLKQLLTPKISRRSFVKGGSILGGITAITSGIALPFASRSASAAPQPATTEDKVVWSACTVNCGSRCPLRMHVSNGEIK WVETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPMKRIGARGEGKFKRISWDEAFTEIADNINRIKKEYGNEAIY LNYGTGTLGGTVTKSWPPGGSLIARLMNLNGGYLNHYGDYSTAQIAEGLNHTYGGFAANNSPSDLENTKLIVQFGNNPAE TRMSGGGVIHHFMEGKAKSNARMIVIDPRYTDTAGGREDQWIPIRPGTDTAFIAAMAHVMIKEDLVDQAFLDKYCVGYDE KTLPASAPANSDYKSYILGLGGDNTEKTPKWASTITGIPEDIIIKTAREIGSTKPCAIIQGWGLQRTANGEIASRAISML ALLTGNVGINGGGTGAREGSSSIPFVRFPTLSNPVEASIPMFLWTDAIVRGPEMTATKDGIRGKEKLDVPIKFIWNYAGN CIINQHADINRTHTILQDDSTCEMIVVIDNHMTSSAKYADIVLPDLTTSEQSDFCMDASAGNMPYFIFASQAIKPQFEAR SIYDICTGLADKLGVKEAFTEGRDQEGWLRHLYQLTRAQDPSLPEFDAMREQGIYKRKVDEHFVAYKEFRKDPEANPLKT PTGKIEIYSEKLAELASTWTLKKDEVIHPLPIYVPNFEGYEESKTGNYPLQLTGFHYKARAHSTYGNVSILKDAAPQEMW INPMDAQQRGINNGDLIRIFNDRGEVHIAAKVTPRMMPGVVALGEGGWYAPDGQRVDHGGCINVLTTQRPSPLAKGNPQH TNLVDVQLVKKA
Sequences:
>Translated_812_residues MKLKQLLTPKISRRSFVKGGSILGGITAITSGIALPFASRSASAAPQPATTEDKVVWSACTVNCGSRCPLRMHVSNGEIK WVETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPMKRIGARGEGKFKRISWDEAFTEIADNINRIKKEYGNEAIY LNYGTGTLGGTVTKSWPPGGSLIARLMNLNGGYLNHYGDYSTAQIAEGLNHTYGGFAANNSPSDLENTKLIVQFGNNPAE TRMSGGGVIHHFMEGKAKSNARMIVIDPRYTDTAGGREDQWIPIRPGTDTAFIAAMAHVMIKEDLVDQAFLDKYCVGYDE KTLPASAPANSDYKSYILGLGGDNTEKTPKWASTITGIPEDIIIKTAREIGSTKPCAIIQGWGLQRTANGEIASRAISML ALLTGNVGINGGGTGAREGSSSIPFVRFPTLSNPVEASIPMFLWTDAIVRGPEMTATKDGIRGKEKLDVPIKFIWNYAGN CIINQHADINRTHTILQDDSTCEMIVVIDNHMTSSAKYADIVLPDLTTSEQSDFCMDASAGNMPYFIFASQAIKPQFEAR SIYDICTGLADKLGVKEAFTEGRDQEGWLRHLYQLTRAQDPSLPEFDAMREQGIYKRKVDEHFVAYKEFRKDPEANPLKT PTGKIEIYSEKLAELASTWTLKKDEVIHPLPIYVPNFEGYEESKTGNYPLQLTGFHYKARAHSTYGNVSILKDAAPQEMW INPMDAQQRGINNGDLIRIFNDRGEVHIAAKVTPRMMPGVVALGEGGWYAPDGQRVDHGGCINVLTTQRPSPLAKGNPQH TNLVDVQLVKKA >Mature_812_residues MKLKQLLTPKISRRSFVKGGSILGGITAITSGIALPFASRSASAAPQPATTEDKVVWSACTVNCGSRCPLRMHVSNGEIK WVETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPMKRIGARGEGKFKRISWDEAFTEIADNINRIKKEYGNEAIY LNYGTGTLGGTVTKSWPPGGSLIARLMNLNGGYLNHYGDYSTAQIAEGLNHTYGGFAANNSPSDLENTKLIVQFGNNPAE TRMSGGGVIHHFMEGKAKSNARMIVIDPRYTDTAGGREDQWIPIRPGTDTAFIAAMAHVMIKEDLVDQAFLDKYCVGYDE KTLPASAPANSDYKSYILGLGGDNTEKTPKWASTITGIPEDIIIKTAREIGSTKPCAIIQGWGLQRTANGEIASRAISML ALLTGNVGINGGGTGAREGSSSIPFVRFPTLSNPVEASIPMFLWTDAIVRGPEMTATKDGIRGKEKLDVPIKFIWNYAGN CIINQHADINRTHTILQDDSTCEMIVVIDNHMTSSAKYADIVLPDLTTSEQSDFCMDASAGNMPYFIFASQAIKPQFEAR SIYDICTGLADKLGVKEAFTEGRDQEGWLRHLYQLTRAQDPSLPEFDAMREQGIYKRKVDEHFVAYKEFRKDPEANPLKT PTGKIEIYSEKLAELASTWTLKKDEVIHPLPIYVPNFEGYEESKTGNYPLQLTGFHYKARAHSTYGNVSILKDAAPQEMW INPMDAQQRGINNGDLIRIFNDRGEVHIAAKVTPRMMPGVVALGEGGWYAPDGQRVDHGGCINVLTTQRPSPLAKGNPQH TNLVDVQLVKKA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. Allows E.coli to grow anaerobically on Me(2)SO as respiratory oxidant [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081797, Length=808, Percent_Identity=71.039603960396, Blast_Score=1197, Evalue=0.0, Organism=Escherichia coli, GI1787870, Length=804, Percent_Identity=62.6865671641791, Blast_Score=1063, Evalue=0.0, Organism=Escherichia coli, GI171474008, Length=809, Percent_Identity=60.3213844252163, Blast_Score=1020, Evalue=0.0, Organism=Escherichia coli, GI87081994, Length=829, Percent_Identity=31.4837153196622, Blast_Score=314, Evalue=1e-86, Organism=Escherichia coli, GI1787231, Length=762, Percent_Identity=32.4146981627297, Blast_Score=307, Evalue=2e-84, Organism=Escherichia coli, GI145693196, Length=739, Percent_Identity=28.958051420839, Blast_Score=271, Evalue=9e-74, Organism=Escherichia coli, GI3868721, Length=763, Percent_Identity=24.5085190039318, Blast_Score=156, Evalue=4e-39, Organism=Escherichia coli, GI3868720, Length=476, Percent_Identity=27.5210084033613, Blast_Score=121, Evalue=2e-28, Organism=Escherichia coli, GI3868719, Length=467, Percent_Identity=26.7665952890792, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI1787477, Length=307, Percent_Identity=28.9902280130293, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1788534, Length=864, Percent_Identity=22.5694444444444, Blast_Score=88, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011888 - InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 89403; Mature: 89403
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1 ; PS00932 MOLYBDOPTERIN_PROK_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKQLLTPKISRRSFVKGGSILGGITAITSGIALPFASRSASAAPQPATTEDKVVWSAC CCCHHHHCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE TVNCGSRCPLRMHVSNGEIKWVETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPM EECCCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCH KRIGARGEGKFKRISWDEAFTEIADNINRIKKEYGNEAIYLNYGTGTLGGTVTKSWPPGG HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCCCH SLIARLMNLNGGYLNHYGDYSTAQIAEGLNHTYGGFAANNSPSDLENTKLIVQFGNNPAE HHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCEEEEEECCCHHH TRMSGGGVIHHFMEGKAKSNARMIVIDPRYTDTAGGREDQWIPIRPGTDTAFIAAMAHVM HCCCCCCEEHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH IKEDLVDQAFLDKYCVGYDEKTLPASAPANSDYKSYILGLGGDNTEKTPKWASTITGIPE HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCH DIIIKTAREIGSTKPCAIIQGWGLQRTANGEIASRAISMLALLTGNVGINGGGTGAREGS HHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC SSIPFVRFPTLSNPVEASIPMFLWTDAIVRGPEMTATKDGIRGKEKLDVPIKFIWNYAGN CCCCEEECCCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC CIINQHADINRTHTILQDDSTCEMIVVIDNHMTSSAKYADIVLPDLTTSEQSDFCMDASA EEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECCC GNMPYFIFASQAIKPQFEARSIYDICTGLADKLGVKEAFTEGRDQEGWLRHLYQLTRAQD CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHCCC PSLPEFDAMREQGIYKRKVDEHFVAYKEFRKDPEANPLKTPTGKIEIYSEKLAELASTWT CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCC LKKDEVIHPLPIYVPNFEGYEESKTGNYPLQLTGFHYKARAHSTYGNVSILKDAAPQEMW CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCCEEEEECCCCHHHC INPMDAQQRGINNGDLIRIFNDRGEVHIAAKVTPRMMPGVVALGEGGWYAPDGQRVDHGG CCCCCHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEECCCCEECCCCCEECCCC CINVLTTQRPSPLAKGNPQHTNLVDVQLVKKA EEEEEECCCCCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKLKQLLTPKISRRSFVKGGSILGGITAITSGIALPFASRSASAAPQPATTEDKVVWSAC CCCHHHHCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE TVNCGSRCPLRMHVSNGEIKWVETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPM EECCCCCCCEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCH KRIGARGEGKFKRISWDEAFTEIADNINRIKKEYGNEAIYLNYGTGTLGGTVTKSWPPGG HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCCCH SLIARLMNLNGGYLNHYGDYSTAQIAEGLNHTYGGFAANNSPSDLENTKLIVQFGNNPAE HHHHHHHHCCCCEECCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCEEEEEECCCHHH TRMSGGGVIHHFMEGKAKSNARMIVIDPRYTDTAGGREDQWIPIRPGTDTAFIAAMAHVM HCCCCCCEEHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH IKEDLVDQAFLDKYCVGYDEKTLPASAPANSDYKSYILGLGGDNTEKTPKWASTITGIPE HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCH DIIIKTAREIGSTKPCAIIQGWGLQRTANGEIASRAISMLALLTGNVGINGGGTGAREGS HHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC SSIPFVRFPTLSNPVEASIPMFLWTDAIVRGPEMTATKDGIRGKEKLDVPIKFIWNYAGN CCCCEEECCCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC CIINQHADINRTHTILQDDSTCEMIVVIDNHMTSSAKYADIVLPDLTTSEQSDFCMDASA EEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECCC GNMPYFIFASQAIKPQFEARSIYDICTGLADKLGVKEAFTEGRDQEGWLRHLYQLTRAQD CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHCCC PSLPEFDAMREQGIYKRKVDEHFVAYKEFRKDPEANPLKTPTGKIEIYSEKLAELASTWT CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCC LKKDEVIHPLPIYVPNFEGYEESKTGNYPLQLTGFHYKARAHSTYGNVSILKDAAPQEMW CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCCEEEEECCCCHHHC INPMDAQQRGINNGDLIRIFNDRGEVHIAAKVTPRMMPGVVALGEGGWYAPDGQRVDHGG CCCCCHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEECCCCEECCCCCEECCCC CINVLTTQRPSPLAKGNPQHTNLVDVQLVKKA EEEEEECCCCCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: Fe; Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3062312; 8905232; 9278503; 2170332; 8125918; 10801884 [H]