Click here to switch to the map view.

The map label for this gene is 59713039

Identifier: 59713039

GI number: 59713039

Start: 2732165

End: 2732515

Strand: Direct

Name: 59713039

Synonym: VF_2432

Alternate gene names: NA

Gene position: 2732165-2732515 (Clockwise)

Preceding gene: 59713035

Following gene: 59713043

Centisome position: 94.29

GC content: 37.89

Gene sequence:

>351_bases
ATGAAATCTACTAATTCAAACATTGCTATTATTGCTATCGCTGCACTAGGTGCAGGAGCAATCTCTTTATTTCCAACAGT
ATCTCCGGCTTTTGCTTTCGCTTTTGGCGCAGTGATTACAGGTTTTACGGTTTTAACTATTAACAAAGCTCCAGCACAAT
CAAACTCAAATGATTCTGCTGATACTGCTCCAAACTCAGATCAAGCTAGTACTACATTATATGTGGGTAATTTACCTTAT
CGTGCAAATGAGTCAGATGTAAAAGAACTCTTTGCTGAATTTGGTGATGTATTTGCAGTACGTTTAATGAAAGACAAACG
CACTGGTAAAAGAAGAGGCTTGGTTTCGTAG

Upstream 100 bases:

>100_bases
TGGCTTAATTAGTTGGCAATTGATACACAATATAAGTAGTATCAATGTGATTTTATTGTTAATTCATCACTTTCCATTTA
TTTACTAGACCTTACTTATC

Downstream 100 bases:

>100_bases
TAGTTGCAACAAAAGACGCTGACAACGTTATTGAAAATTTAAACAATAACGAATTTGATCAGCGAACTCTAAAAGTGCGT
ATTGCTAATGATCCTAAAAC

Product: RNA-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MKSTNSNIAIIAIAALGAGAISLFPTVSPAFAFAFGAVITGFTVLTINKAPAQSNSNDSADTAPNSDQASTTLYVGNLPY
RANESDVKELFAEFGDVFAVRLMKDKRTGKRRGLVS

Sequences:

>Translated_116_residues
MKSTNSNIAIIAIAALGAGAISLFPTVSPAFAFAFGAVITGFTVLTINKAPAQSNSNDSADTAPNSDQASTTLYVGNLPY
RANESDVKELFAEFGDVFAVRLMKDKRTGKRRGLVS
>Mature_116_residues
MKSTNSNIAIIAIAALGAGAISLFPTVSPAFAFAFGAVITGFTVLTINKAPAQSNSNDSADTAPNSDQASTTLYVGNLPY
RANESDVKELFAEFGDVFAVRLMKDKRTGKRRGLVS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12161; Mature: 12161

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTNSNIAIIAIAALGAGAISLFPTVSPAFAFAFGAVITGFTVLTINKAPAQSNSNDSA
CCCCCCCEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCC
DTAPNSDQASTTLYVGNLPYRANESDVKELFAEFGDVFAVRLMKDKRTGKRRGLVS
CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKSTNSNIAIIAIAALGAGAISLFPTVSPAFAFAFGAVITGFTVLTINKAPAQSNSNDSA
CCCCCCCEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCC
DTAPNSDQASTTLYVGNLPYRANESDVKELFAEFGDVFAVRLMKDKRTGKRRGLVS
CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA