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The map label for this gene is 59712989

Identifier: 59712989

GI number: 59712989

Start: 2671666

End: 2672307

Strand: Direct

Name: 59712989

Synonym: VF_2382

Alternate gene names: NA

Gene position: 2671666-2672307 (Clockwise)

Preceding gene: 59712988

Following gene: 172087770

Centisome position: 92.2

GC content: 38.01

Gene sequence:

>642_bases
ATGAATTATTTACAACGATTATGGTGGCAATATAAGTTACGATCCCATAAAAACTTATCTCTTTTTCATCATTATTCTGG
CGATGAGTTGGTGTCTATTGATTGTGAAACAACGAGTCTAAACCCCAACCATGCCGAATTGGTTTCTATTGCTGCTATCA
AAATTAAAAATAATAGAGTGTTAACCAGTCAGACAATTCATTTAAAGCTGACGCCACCACAAAGCCTAAACTCCGATTCA
ATCAAAATACACCAATTAAGGCATCAAGATCTCCATCATGGGCTATCCGAACAACAAGCGATGACTCAATTGCTTGAATT
TATCGGTAATCGCCATATTGTTGGATACCATATCCGCTATGACAAAAAGATTTTAGATCGAGCTTGCTTGCGTCATTTTT
CTCATCCTTTACCCAATTCGCTGATTGAAGTTAGTCATATCTACCATAATAAATTGGAACGACTACTACCCAATGCGTAT
TACGATTTAAGTATTGAAGCTATCTCCAAACATTTGGGATTACCACAAGCTGACAGGCATGATGCACTTGAAGATGCGAT
AGCCGCTGCGCTTATTTATGTGCGTTTAACTCATGGTGACTTCCCTGACATTCCCTCAAGTAAAAACGCTCATAGTTACT
GA

Upstream 100 bases:

>100_bases
CCTCGACCGTACTGAGCGAGACCTCTTACGCCACAGCTTACACATAGTAAAAAAGTTCAAAGAATGGCTTGGTTATCATT
ACCAAATAAGGGATTAAACG

Downstream 100 bases:

>100_bases
TCTGTGTCTCAAAAAATGACTGATTTCCCCCTCAATATTCAGTAAACCCTTCTTTCTCTGACTAAAGTCTAATTGTTGAA
AACACATTTCTAGCTGAAAG

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: Exonuclease RNAse T And DNA Polymerase III; DNA Polymerase III Epsilon Subunit; Exonuclease RNAase T And DNA Polymerase III; Exonuclease Superfamily; Exonuclease

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNYLQRLWWQYKLRSHKNLSLFHHYSGDELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDS
IKIHQLRHQDLHHGLSEQQAMTQLLEFIGNRHIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHIYHNKLERLLPNAY
YDLSIEAISKHLGLPQADRHDALEDAIAAALIYVRLTHGDFPDIPSSKNAHSY

Sequences:

>Translated_213_residues
MNYLQRLWWQYKLRSHKNLSLFHHYSGDELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDS
IKIHQLRHQDLHHGLSEQQAMTQLLEFIGNRHIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHIYHNKLERLLPNAY
YDLSIEAISKHLGLPQADRHDALEDAIAAALIYVRLTHGDFPDIPSSKNAHSY
>Mature_213_residues
MNYLQRLWWQYKLRSHKNLSLFHHYSGDELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDS
IKIHQLRHQDLHHGLSEQQAMTQLLEFIGNRHIVGYHIRYDKKILDRACLRHFSHPLPNSLIEVSHIYHNKLERLLPNAY
YDLSIEAISKHLGLPQADRHDALEDAIAAALIYVRLTHGDFPDIPSSKNAHSY

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24607; Mature: 24607

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYLQRLWWQYKLRSHKNLSLFHHYSGDELVSIDCETTSLNPNHAELVSIAAIKIKNNRV
CCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHEEEEEEEEEECCEE
LTSQTIHLKLTPPQSLNSDSIKIHQLRHQDLHHGLSEQQAMTQLLEFIGNRHIVGYHIRY
EEEEEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEH
DKKILDRACLRHFSHPLPNSLIEVSHIYHNKLERLLPNAYYDLSIEAISKHLGLPQADRH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCHH
DALEDAIAAALIYVRLTHGDFPDIPSSKNAHSY
HHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNYLQRLWWQYKLRSHKNLSLFHHYSGDELVSIDCETTSLNPNHAELVSIAAIKIKNNRV
CCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHEEEEEEEEEECCEE
LTSQTIHLKLTPPQSLNSDSIKIHQLRHQDLHHGLSEQQAMTQLLEFIGNRHIVGYHIRY
EEEEEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEH
DKKILDRACLRHFSHPLPNSLIEVSHIYHNKLERLLPNAYYDLSIEAISKHLGLPQADRH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCHH
DALEDAIAAALIYVRLTHGDFPDIPSSKNAHSY
HHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA