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The map label for this gene is petB [H]

Identifier: 59712825

GI number: 59712825

Start: 2490227

End: 2491495

Strand: Reverse

Name: petB [H]

Synonym: VF_2218

Alternate gene names: 59712825

Gene position: 2491495-2490227 (Counterclockwise)

Preceding gene: 172087761

Following gene: 59712824

Centisome position: 85.99

GC content: 38.61

Gene sequence:

>1269_bases
ATGCAACCGTTACTTGATTGGGTAGAGAAGCGTCTGCCTGCGATGAATGCATATAAGAAGCATTTATCAGAGTACCCAAT
GCCAAAAAACTTTAACTTTTGGTATTTCTTTGGCTCTTTGGCCATGTTGGTTTTGGTTAATCAGATCGTAACTGGTATTT
GGTTAACGATGAACTATGTTCCTTCTGGTGAAGGTGCGTTTGCCTCTGTTGAATACATCATGCGTGATGTTGATTATGGA
TGGTTACTTCGTTATATGCACTCAACTGGGGCATCTGCCTTTTTTGTTGTTGTTTACCTGCATATGTTTCGTGGTCTAAT
TTATGGTTCTTATCAAAAGCCGCGTGAACTGTTGTGGTTATTTGGTATGTTGATCTTCTTAGTTTTAATGGCTGAAGCAT
TCATGGGGTATTTATTACCTTGGGGTCAAATGTCTTACTGGGGAGCTCAAGTAATCATTTCTTTATTTGGCGCAATTCCT
ATTATTGGTGATGATCTTACCCTTTGGATCCGTGGTGACTATGTTATTTCGGGAGCGACGCTAAACCGTTTCTTTGCACT
TCATGTTATTGCACTACCAATTGTTTTATTACTTCTAGTTGTTCTTCATATTTTAGCTTTGCATGAGGTTGGTTCTAATA
ACCCTGATGGTATTGAAACTAAACTACCAAAAGCAAAAGACGATAAAGGTGAGCATAAAACACAGTTTAAGTTCCACGAA
TATTACACAAGTAAATATAACATCATTGATTCAGTGCCTTTCCATCCTTATGGAACGGTTAAAGATATGATTGGTGTGGC
TGGTTTCTTATTTTTCTTCTGTTACGTGTTGTTCTTTAATCCTGAAATGGGAGGCTACTTCCTTGAGCCGCCTAACTTTG
AAGCTGCAAACCCATTAAAAACCCCTGAGCACATTGCGCCTGTTTGGTATTTCACACCATTCTATGCCATCTTGCGTGCG
GTTCCTGATAAATTATTAGGGGTAGTAGCAATGGGGGCGTCGATAGTCGTATTGTTCTTACTTCCATGGTTGGATCGTTG
TAAGGTTCGCTCTTATCGTTACCGTAGCAAGTTACACTTGTTGAATATTATCCAATTTACTATCAGCTTTATTGCATTAG
GTGTATTAGGTGCGTTACCTGCAACACCAACTTATACGCTGTTAGCTCAAATCTTTAGTCTGATGTACTTTATGTTCTTC
GTTATTCTGTTTATTTACAGTAAAAATGAAGTCACAAAACCATTACCAGAGAGGGTGACATTCAAATGA

Upstream 100 bases:

>100_bases
TCCAAGGTGTTCCGGCACCTCTGAATCTTGTTGTTCCTAAGCACATGTACCTTAGTGATACTCGTATCCTAGTTGGGGTT
GATGAAGGAGGGGAAGCCTA

Downstream 100 bases:

>100_bases
AAAAGTTGATTTTAGTGCTTTTTGCTTTGTTGCCATCAATGGCGATGGCAGCAGGTGCAAACGTACCATTAGATAAAGCG
AATAATGATATTAGCGATCA

Product: cytochrome b

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MQPLLDWVEKRLPAMNAYKKHLSEYPMPKNFNFWYFFGSLAMLVLVNQIVTGIWLTMNYVPSGEGAFASVEYIMRDVDYG
WLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWLFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIP
IIGDDLTLWIRGDYVISGATLNRFFALHVIALPIVLLLLVVLHILALHEVGSNNPDGIETKLPKAKDDKGEHKTQFKFHE
YYTSKYNIIDSVPFHPYGTVKDMIGVAGFLFFFCYVLFFNPEMGGYFLEPPNFEAANPLKTPEHIAPVWYFTPFYAILRA
VPDKLLGVVAMGASIVVLFLLPWLDRCKVRSYRYRSKLHLLNIIQFTISFIALGVLGALPATPTYTLLAQIFSLMYFMFF
VILFIYSKNEVTKPLPERVTFK

Sequences:

>Translated_422_residues
MQPLLDWVEKRLPAMNAYKKHLSEYPMPKNFNFWYFFGSLAMLVLVNQIVTGIWLTMNYVPSGEGAFASVEYIMRDVDYG
WLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWLFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIP
IIGDDLTLWIRGDYVISGATLNRFFALHVIALPIVLLLLVVLHILALHEVGSNNPDGIETKLPKAKDDKGEHKTQFKFHE
YYTSKYNIIDSVPFHPYGTVKDMIGVAGFLFFFCYVLFFNPEMGGYFLEPPNFEAANPLKTPEHIAPVWYFTPFYAILRA
VPDKLLGVVAMGASIVVLFLLPWLDRCKVRSYRYRSKLHLLNIIQFTISFIALGVLGALPATPTYTLLAQIFSLMYFMFF
VILFIYSKNEVTKPLPERVTFK
>Mature_422_residues
MQPLLDWVEKRLPAMNAYKKHLSEYPMPKNFNFWYFFGSLAMLVLVNQIVTGIWLTMNYVPSGEGAFASVEYIMRDVDYG
WLLRYMHSTGASAFFVVVYLHMFRGLIYGSYQKPRELLWLFGMLIFLVLMAEAFMGYLLPWGQMSYWGAQVIISLFGAIP
IIGDDLTLWIRGDYVISGATLNRFFALHVIALPIVLLLLVVLHILALHEVGSNNPDGIETKLPKAKDDKGEHKTQFKFHE
YYTSKYNIIDSVPFHPYGTVKDMIGVAGFLFFFCYVLFFNPEMGGYFLEPPNFEAANPLKTPEHIAPVWYFTPFYAILRA
VPDKLLGVVAMGASIVVLFLLPWLDRCKVRSYRYRSKLHLLNIIQFTISFIALGVLGALPATPTYTLLAQIFSLMYFMFF
VILFIYSKNEVTKPLPERVTFK

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=396, Percent_Identity=40.6565656565657, Blast_Score=269, Evalue=4e-72,
Organism=Saccharomyces cerevisiae, GI6226529, Length=385, Percent_Identity=41.8181818181818, Blast_Score=280, Evalue=3e-76,
Organism=Saccharomyces cerevisiae, GI6226532, Length=274, Percent_Identity=41.2408759124088, Blast_Score=201, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6226531, Length=163, Percent_Identity=49.6932515337423, Blast_Score=154, Evalue=3e-38,
Organism=Saccharomyces cerevisiae, GI6226530, Length=143, Percent_Identity=49.6503496503497, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 48521; Mature: 48521

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CC
>Mature Secondary Structure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CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA