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The map label for this gene is petC [H]

Identifier: 59712824

GI number: 59712824

Start: 2489493

End: 2490230

Strand: Reverse

Name: petC [H]

Synonym: VF_2217

Alternate gene names: 59712824

Gene position: 2490230-2489493 (Counterclockwise)

Preceding gene: 59712825

Following gene: 59712823

Centisome position: 85.94

GC content: 41.6

Gene sequence:

>738_bases
ATGAAAAAGTTGATTTTAGTGCTTTTTGCTTTGTTGCCATCAATGGCGATGGCAGCAGGTGCAAACGTACCATTAGATAA
AGCGAATAATGATATTAGCGATCAAGCATCTCTACAAAATGGTGCGAAGATCTTCATGAATTATTGTGCCGGTTGCCACT
CAACACAATATCAGCGCTATAACCGTGTTGCTGAAGACTTAGGGATTCCACCTGATTTGATGATGGAAAACTTAGTGTTT
AATCCTGACGCCAAGATCGGTGACTTAATGAAGAGTGCGATCCCTGAAAAACAAGCAGCTAACTGGTTTGGTGCTCCGCC
TCCAGATTTAACACTTGTAGCTCGCGTGCGAGGTACCGATTGGTTATATACTTATTTACGTACTTTCTATGCGGATCCTA
CTCGTCCATTTGGTGTGAATAATATGGTGTTCCCAAGTGTTGGTATGCCTCATGTACTTCAAGAGCTACAAGGGGTAACT
ACACCAGTTTATGAAACTACAACGGTTGATGGTGTTGAGCATAAAGTTGTTGTTGGGGTTGAGTCTGATGGCACTGGAGA
GCTTAGCTCTGGTGAATACGATACAGCGGTTCGCGATTTAGTTAACTTTTTAGAATACTCAGGTGATCCTGTAAAACTTG
AACGCCATCGTTTAGGTTGGTGGGTTATGGGCTTTTTAGTGATATTCGCCTTTGTTTCTTATTTACTTAAGAAAGAATAT
TGGCGTGATGTCCACTAA

Upstream 100 bases:

>100_bases
CTCAAATCTTTAGTCTGATGTACTTTATGTTCTTCGTTATTCTGTTTATTTACAGTAAAAATGAAGTCACAAAACCATTA
CCAGAGAGGGTGACATTCAA

Downstream 100 bases:

>100_bases
TCGTGATATTCTAGATCGTTAATTGTACGCAATGGAGGCTCAGCCTCCATTGTTTTTGTGTCACTATTATTTTTATAGTA
ATAATAGATGACGGCACCCT

Product: cytochrome c1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKKLILVLFALLPSMAMAAGANVPLDKANNDISDQASLQNGAKIFMNYCAGCHSTQYQRYNRVAEDLGIPPDLMMENLVF
NPDAKIGDLMKSAIPEKQAANWFGAPPPDLTLVARVRGTDWLYTYLRTFYADPTRPFGVNNMVFPSVGMPHVLQELQGVT
TPVYETTTVDGVEHKVVVGVESDGTGELSSGEYDTAVRDLVNFLEYSGDPVKLERHRLGWWVMGFLVIFAFVSYLLKKEY
WRDVH

Sequences:

>Translated_245_residues
MKKLILVLFALLPSMAMAAGANVPLDKANNDISDQASLQNGAKIFMNYCAGCHSTQYQRYNRVAEDLGIPPDLMMENLVF
NPDAKIGDLMKSAIPEKQAANWFGAPPPDLTLVARVRGTDWLYTYLRTFYADPTRPFGVNNMVFPSVGMPHVLQELQGVT
TPVYETTTVDGVEHKVVVGVESDGTGELSSGEYDTAVRDLVNFLEYSGDPVKLERHRLGWWVMGFLVIFAFVSYLLKKEY
WRDVH
>Mature_245_residues
MKKLILVLFALLPSMAMAAGANVPLDKANNDISDQASLQNGAKIFMNYCAGCHSTQYQRYNRVAEDLGIPPDLMMENLVF
NPDAKIGDLMKSAIPEKQAANWFGAPPPDLTLVARVRGTDWLYTYLRTFYADPTRPFGVNNMVFPSVGMPHVLQELQGVT
TPVYETTTVDGVEHKVVVGVESDGTGELSSGEYDTAVRDLVNFLEYSGDPVKLERHRLGWWVMGFLVIFAFVSYLLKKEY
WRDVH

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c [H]

COG id: COG2857

COG function: function code C; Cytochrome c1

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002326
- InterPro:   IPR021157
- InterPro:   IPR009056 [H]

Pfam domain/function: PF02167 Cytochrom_C1 [H]

EC number: NA

Molecular weight: Translated: 27402; Mature: 27402

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLILVLFALLPSMAMAAGANVPLDKANNDISDQASLQNGAKIFMNYCAGCHSTQYQRY
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
NRVAEDLGIPPDLMMENLVFNPDAKIGDLMKSAIPEKQAANWFGAPPPDLTLVARVRGTD
HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCH
WLYTYLRTFYADPTRPFGVNNMVFPSVGMPHVLQELQGVTTPVYETTTVDGVEHKVVVGV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE
ESDGTGELSSGEYDTAVRDLVNFLEYSGDPVKLERHRLGWWVMGFLVIFAFVSYLLKKEY
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRDVH
HCCCC
>Mature Secondary Structure
MKKLILVLFALLPSMAMAAGANVPLDKANNDISDQASLQNGAKIFMNYCAGCHSTQYQRY
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
NRVAEDLGIPPDLMMENLVFNPDAKIGDLMKSAIPEKQAANWFGAPPPDLTLVARVRGTD
HHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCH
WLYTYLRTFYADPTRPFGVNNMVFPSVGMPHVLQELQGVTTPVYETTTVDGVEHKVVVGV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE
ESDGTGELSSGEYDTAVRDLVNFLEYSGDPVKLERHRLGWWVMGFLVIFAFVSYLLKKEY
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRDVH
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA