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The map label for this gene is sspB [H]

Identifier: 59712822

GI number: 59712822

Start: 2488250

End: 2488714

Strand: Reverse

Name: sspB [H]

Synonym: VF_2215

Alternate gene names: 59712822

Gene position: 2488714-2488250 (Counterclockwise)

Preceding gene: 59712823

Following gene: 59712817

Centisome position: 85.89

GC content: 41.51

Gene sequence:

>465_bases
ATGGATATTCGCTCAATGATGCCGCGTCGCCCTTATTTATTACGAGCGTTCTATGAATGGATCGTAGATAACGAGCTGAC
GCCTCATCTTGTTGTTGATGCAACAATGAATGGTGTTCGAGTTCCAGAAGAGTTTGTTCAAGATGGTCAAATTGTTTTAA
ACGTAGCACCACACTCTGTTGGTAACTTGGAGATGGGTAATGAAGCCGTGACATTTAATGCACGTTTCAGTGGTCGCCCA
CATTCAATCATTTTACCTTTGTACGCAATTCAAGCTATTTATGCTCGTGAAAACGGTGCAGGAACCATGTTTGAACCAGA
AGAAGCGTATGAGATGACAGATGATGAAGGTATTTTTGAAGAAGAAACAAATTTAAATGCTGTTTCTGAAGATAATACAT
CATCAGATGATGAGCCTGAACCTCCGCGTCCAAGTGGTCGTCCGAGCTTAAGAGTCGTTAAGTAA

Upstream 100 bases:

>100_bases
GCGCTAAAGAATTAAAAGTATACATGAACCGAGTATTTGAGCGTGATTCATTCCTAGCTTCTCTAACAGAAGCAGAACGT
GAACTACGTTTAACTAACTA

Downstream 100 bases:

>100_bases
AGTGCAACAATTGAATCCAACTAAAAAGCCTACAGAAATGTAGGCTTTTTATTGTGCTTTGGTTATTAACTATTGCTCGA
CACTGCCACCTTGGCCGTAT

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MDIRSMMPRRPYLLRAFYEWIVDNELTPHLVVDATMNGVRVPEEFVQDGQIVLNVAPHSVGNLEMGNEAVTFNARFSGRP
HSIILPLYAIQAIYARENGAGTMFEPEEAYEMTDDEGIFEEETNLNAVSEDNTSSDDEPEPPRPSGRPSLRVVK

Sequences:

>Translated_154_residues
MDIRSMMPRRPYLLRAFYEWIVDNELTPHLVVDATMNGVRVPEEFVQDGQIVLNVAPHSVGNLEMGNEAVTFNARFSGRP
HSIILPLYAIQAIYARENGAGTMFEPEEAYEMTDDEGIFEEETNLNAVSEDNTSSDDEPEPPRPSGRPSLRVVK
>Mature_154_residues
MDIRSMMPRRPYLLRAFYEWIVDNELTPHLVVDATMNGVRVPEEFVQDGQIVLNVAPHSVGNLEMGNEAVTFNARFSGRP
HSIILPLYAIQAIYARENGAGTMFEPEEAYEMTDDEGIFEEETNLNAVSEDNTSSDDEPEPPRPSGRPSLRVVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=133, Percent_Identity=60.1503759398496, Blast_Score=171, Evalue=2e-44,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 17340; Mature: 17340

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRSMMPRRPYLLRAFYEWIVDNELTPHLVVDATMNGVRVPEEFVQDGQIVLNVAPHSV
CCHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCEEEEEECCCCC
GNLEMGNEAVTFNARFSGRPHSIILPLYAIQAIYARENGAGTMFEPEEAYEMTDDEGIFE
CCEEECCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCEE
EETNLNAVSEDNTSSDDEPEPPRPSGRPSLRVVK
CCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MDIRSMMPRRPYLLRAFYEWIVDNELTPHLVVDATMNGVRVPEEFVQDGQIVLNVAPHSV
CCHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCEEEEEECCCCC
GNLEMGNEAVTFNARFSGRPHSIILPLYAIQAIYARENGAGTMFEPEEAYEMTDDEGIFE
CCEEECCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCEE
EETNLNAVSEDNTSSDDEPEPPRPSGRPSLRVVK
CCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]