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The map label for this gene is yraL [H]

Identifier: 59712817

GI number: 59712817

Start: 2483789

End: 2484718

Strand: Reverse

Name: yraL [H]

Synonym: VF_2210

Alternate gene names: 59712817

Gene position: 2484718-2483789 (Counterclockwise)

Preceding gene: 59712822

Following gene: 59712816

Centisome position: 85.75

GC content: 40.43

Gene sequence:

>930_bases
ATGAAACAATGTATCATTAAGATTGGTATTATTCCCTATATTAATCGCAGAAGAGATAGTAAACAAATGACAGAACACAA
TTTATCTGTGGTGAATACTGCAACTTTGTACATTGTTCCTACACCAATCGGTAATTTAGGGGATATCACGCAGCGAGCCA
TCGAGGTTTTAAAGTCCGTTGACCTTATTGCCGCGGAAGATACACGACATACTGGTAAGTTATTGTCTCATTTTGGTATA
GCGAGTCAAACATTTGCACTGCATGATCATAACGAACAGCATAAAGCAGACTTATTGATCAGTAAATTGCAGCAGGGCCT
ATCTATAGCTCTTGTCTCAGATGCGGGAACACCATTAATCAGTGACCCAGGTTATCATTTAGTCAATCGTTGTCGTCAAG
CGAATGTAAATGTTGTGCCATTACCTGGTGCTTGTGCTGTTATTACTGCACTTTCAGCTGCTGGTCTTCCTTCTGACCGT
TTTAGTTTTGAAGGTTTCCTCCCTCCAAAAAGTAAAGGCCGCCGTGATAAGTTTGAAGAGATTGCACAAGCAGAGCGCAC
TTGTATTTTCTATGAGTCTCCACACCGTATTATGGATTCATTAGATGATATGTTGACGGTTCTTGGTCCTGAGCGACAAG
TTGTATTAGCTCGTGAACTGACAAAAACCTATGAAACGATTCATGGCGCACCATTAGGTGAGTTAATTGAATGGATAAAA
GAAGACGATAATCGTAAGCGTGGAGAGATGGTTTTACTTATCCACGGCTTTAGAAGCGAAGCAAAAGATGAACTCCCATT
TGAAGCGACGCGTTCACTTTCTATTCTTGTAAAAGAACTTCCGCTTAAAAAAGCAGCGGCAATGGCAGCGGAAATACATG
GTGTGAAGAAAAATGCGCTATATAAATGGGGTTTAGAGCATTTAGATTAA

Upstream 100 bases:

>100_bases
GGTCCTACTTAAAAGGGCTGTTGTTACTATGGATGCTCATCACCCAAACAGCTAAAATATATTTTTGATTATAGTGATTG
CTTAGTCTAATACCTAATCT

Downstream 100 bases:

>100_bases
GAGAATTGAGAAAAAGGGGTGGTAAGTTATAACTGACTCTTATATCATTCACCCCATGAGCTGACTCGGTAATCGCTGCT
TCATTGATGTCCTTAGGGAG

Product: methyltransferase

Products: NA

Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKQCIIKIGIIPYINRRRDSKQMTEHNLSVVNTATLYIVPTPIGNLGDITQRAIEVLKSVDLIAAEDTRHTGKLLSHFGI
ASQTFALHDHNEQHKADLLISKLQQGLSIALVSDAGTPLISDPGYHLVNRCRQANVNVVPLPGACAVITALSAAGLPSDR
FSFEGFLPPKSKGRRDKFEEIAQAERTCIFYESPHRIMDSLDDMLTVLGPERQVVLARELTKTYETIHGAPLGELIEWIK
EDDNRKRGEMVLLIHGFRSEAKDELPFEATRSLSILVKELPLKKAAAMAAEIHGVKKNALYKWGLEHLD

Sequences:

>Translated_309_residues
MKQCIIKIGIIPYINRRRDSKQMTEHNLSVVNTATLYIVPTPIGNLGDITQRAIEVLKSVDLIAAEDTRHTGKLLSHFGI
ASQTFALHDHNEQHKADLLISKLQQGLSIALVSDAGTPLISDPGYHLVNRCRQANVNVVPLPGACAVITALSAAGLPSDR
FSFEGFLPPKSKGRRDKFEEIAQAERTCIFYESPHRIMDSLDDMLTVLGPERQVVLARELTKTYETIHGAPLGELIEWIK
EDDNRKRGEMVLLIHGFRSEAKDELPFEATRSLSILVKELPLKKAAAMAAEIHGVKKNALYKWGLEHLD
>Mature_309_residues
MKQCIIKIGIIPYINRRRDSKQMTEHNLSVVNTATLYIVPTPIGNLGDITQRAIEVLKSVDLIAAEDTRHTGKLLSHFGI
ASQTFALHDHNEQHKADLLISKLQQGLSIALVSDAGTPLISDPGYHLVNRCRQANVNVVPLPGACAVITALSAAGLPSDR
FSFEGFLPPKSKGRRDKFEEIAQAERTCIFYESPHRIMDSLDDMLTVLGPERQVVLARELTKTYETIHGAPLGELIEWIK
EDDNRKRGEMVLLIHGFRSEAKDELPFEATRSLSILVKELPLKKAAAMAAEIHGVKKNALYKWGLEHLD

Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA [H]

COG id: COG0313

COG function: function code R; Predicted methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmI family [H]

Homologues:

Organism=Escherichia coli, GI1789535, Length=285, Percent_Identity=68.4210526315789, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000878
- InterPro:   IPR014777
- InterPro:   IPR008189
- InterPro:   IPR018063 [H]

Pfam domain/function: PF00590 TP_methylase [H]

EC number: NA

Molecular weight: Translated: 34367; Mature: 34367

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS01296 UPF0011

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQCIIKIGIIPYINRRRDSKQMTEHNLSVVNTATLYIVPTPIGNLGDITQRAIEVLKSV
CCCEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHH
DLIAAEDTRHTGKLLSHFGIASQTFALHDHNEQHKADLLISKLQQGLSIALVSDAGTPLI
HHEECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
SDPGYHLVNRCRQANVNVVPLPGACAVITALSAAGLPSDRFSFEGFLPPKSKGRRDKFEE
CCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
IAQAERTCIFYESPHRIMDSLDDMLTVLGPERQVVLARELTKTYETIHGAPLGELIEWIK
HHHHHCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
EDDNRKRGEMVLLIHGFRSEAKDELPFEATRSLSILVKELPLKKAAAMAAEIHGVKKNAL
CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHH
YKWGLEHLD
HHHCHHHCC
>Mature Secondary Structure
MKQCIIKIGIIPYINRRRDSKQMTEHNLSVVNTATLYIVPTPIGNLGDITQRAIEVLKSV
CCCEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHH
DLIAAEDTRHTGKLLSHFGIASQTFALHDHNEQHKADLLISKLQQGLSIALVSDAGTPLI
HHEECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
SDPGYHLVNRCRQANVNVVPLPGACAVITALSAAGLPSDRFSFEGFLPPKSKGRRDKFEE
CCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
IAQAERTCIFYESPHRIMDSLDDMLTVLGPERQVVLARELTKTYETIHGAPLGELIEWIK
HHHHHCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
EDDNRKRGEMVLLIHGFRSEAKDELPFEATRSLSILVKELPLKKAAAMAAEIHGVKKNAL
CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHH
YKWGLEHLD
HHHCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]