Click here to switch to the map view.

The map label for this gene is yaaJ [H]

Identifier: 59712717

GI number: 59712717

Start: 2344964

End: 2346397

Strand: Reverse

Name: yaaJ [H]

Synonym: VF_2110

Alternate gene names: 59712717

Gene position: 2346397-2344964 (Counterclockwise)

Preceding gene: 59712719

Following gene: 59712716

Centisome position: 80.98

GC content: 40.17

Gene sequence:

>1434_bases
GTGGCAAGTCTTATTAATTTATTGAATGACCTATTATGGGGTTCAGTACTTGTATATTTATTAGTTGCTATCGGTATCTA
CTTCACTGTTCGATTAGGTTTTATTCAATTCCGCCATTTTGGACATATGTTTTCGGTATTGAAGGACAGTCGAAAGTCAG
ACACATCAGGTATATCATCATTCCAAGCATTATGTACGAGTTTAGCTGCTCGAGTTGGTACCGGGAACATGGCAGGGGTA
GCTGTTGCGCTTACCGCTGGTGGTCCAGGTGCTATTTTTTGGATGTGGTTGATTGCGATGTTAGGTATGGCAACATCATT
TGCAGAAAGCACATTAGCGCAATTATATAAAACCAAAGACGATGACGGTAATTATCGTGGTGGTCCTGCCTATTATATGG
AGAAGGGACTTGGAATGCGCTGGATGGGCGTGCTTTTTTCAGTATTTTTAATCATCGCATTTGGTCTTGTATTTAACGCT
GTTCAAGCCAACTCTATCGTTGGTGCAATGCAAACTGCATTTGGTTGGAAACCTTTGTATGTTGGTGTTGCGATTGTCAT
TTTATCTGCGGTTGTTATTTTTGGCGGATTTAGAACAATTGCACGTACTGCTGAAATTGTTGTTCCAGTAATGGCTTTAG
CCTACTTGGCAATTGCTTTCTTTATCATGTTTACCAACATTGAAAAGCTACCAAGTGTGATTAGCTTGATATTCAAGAGT
GCATTTGGCCTACAAGAAGCTGCCGCAGGTGGTTTAGGTTATGCAATAGCTCAAGCTATGATTAATGGTATTAAGCGTGG
TTTGTTCTCGAATGAGGCCGGTATGGGTTCAGCTCCGAATGCTGCTGCATCTGCGACACCATATCCTCCGCACCCAGCAT
CTCAAGGTTATGTGCAAATGCTAGGTGTATTCATGGATACAATTGTGATTTGTTCTGCGACAGTGGCTATCATTTTAATG
TCTGGTGAGTATGTTCCTCATGGTGAAGTCACGGGTATTGAATTAACTCAGTTAGCATTAACAAGTCAAGTTGGTGATTG
GGGCGGTATTTTTGTTGCTGTAGCGATTTTCTTTTTCGCTTTTACTTCGATTATTGCCAACTACTCTTATGCAGAAACGA
ATTTAATCTTCTTAGAACATAATCATAAAGCGGGCATTGGTATTTTCCGAGTGATCGTTCTGGGTATGGTGATGTTTGGA
GCGTTATCCTCATTACCTACTGTATGGGCATTAGCGGACGTATCAATGGGATTAATGGCAATTGTAAACTTAATAGCTAT
CGCATTGCTGTCAGGAACCGTGATTAAGCTTGCTAAAGATTATAATAAGCAACTTAAAGAAGGTAAATTACCTACCTTTG
ATAGTAAAGATTATCCAGAGCTTCACTCTCAATTAGAGGAAGGGATTTGGGATAATACAAAAGAGCAAAAATAG

Upstream 100 bases:

>100_bases
ATAATTAATAGAATTGTAAGCTTAAGATTAGAGCGAGAAGGGGACACTTAATAATAGTTAAGTGTGTATGTGTTTTTACG
AATGTAACTGAGGGGAAAAA

Downstream 100 bases:

>100_bases
TCATTGTTTTTGCCCATCAAATAAATAGATAAAGCCATGCATTCGAGCGTGGCTTTTTTTTATTTGAATCGTTAATATCT
TGTATATATAAAAATACAAA

Product: transporter

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MASLINLLNDLLWGSVLVYLLVAIGIYFTVRLGFIQFRHFGHMFSVLKDSRKSDTSGISSFQALCTSLAARVGTGNMAGV
AVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTKDDDGNYRGGPAYYMEKGLGMRWMGVLFSVFLIIAFGLVFNA
VQANSIVGAMQTAFGWKPLYVGVAIVILSAVVIFGGFRTIARTAEIVVPVMALAYLAIAFFIMFTNIEKLPSVISLIFKS
AFGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLGVFMDTIVICSATVAIILM
SGEYVPHGEVTGIELTQLALTSQVGDWGGIFVAVAIFFFAFTSIIANYSYAETNLIFLEHNHKAGIGIFRVIVLGMVMFG
ALSSLPTVWALADVSMGLMAIVNLIAIALLSGTVIKLAKDYNKQLKEGKLPTFDSKDYPELHSQLEEGIWDNTKEQK

Sequences:

>Translated_477_residues
MASLINLLNDLLWGSVLVYLLVAIGIYFTVRLGFIQFRHFGHMFSVLKDSRKSDTSGISSFQALCTSLAARVGTGNMAGV
AVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTKDDDGNYRGGPAYYMEKGLGMRWMGVLFSVFLIIAFGLVFNA
VQANSIVGAMQTAFGWKPLYVGVAIVILSAVVIFGGFRTIARTAEIVVPVMALAYLAIAFFIMFTNIEKLPSVISLIFKS
AFGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLGVFMDTIVICSATVAIILM
SGEYVPHGEVTGIELTQLALTSQVGDWGGIFVAVAIFFFAFTSIIANYSYAETNLIFLEHNHKAGIGIFRVIVLGMVMFG
ALSSLPTVWALADVSMGLMAIVNLIAIALLSGTVIKLAKDYNKQLKEGKLPTFDSKDYPELHSQLEEGIWDNTKEQK
>Mature_476_residues
ASLINLLNDLLWGSVLVYLLVAIGIYFTVRLGFIQFRHFGHMFSVLKDSRKSDTSGISSFQALCTSLAARVGTGNMAGVA
VALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTKDDDGNYRGGPAYYMEKGLGMRWMGVLFSVFLIIAFGLVFNAV
QANSIVGAMQTAFGWKPLYVGVAIVILSAVVIFGGFRTIARTAEIVVPVMALAYLAIAFFIMFTNIEKLPSVISLIFKSA
FGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLGVFMDTIVICSATVAIILMS
GEYVPHGEVTGIELTQLALTSQVGDWGGIFVAVAIFFFAFTSIIANYSYAETNLIFLEHNHKAGIGIFRVIVLGMVMFGA
LSSLPTVWALADVSMGLMAIVNLIAIALLSGTVIKLAKDYNKQLKEGKLPTFDSKDYPELHSQLEEGIWDNTKEQK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=476, Percent_Identity=50.2100840336134, Blast_Score=463, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 51152; Mature: 51021

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ASLINLLNDLLWGSVLVYLLVAIGIYFTVRLGFIQFRHFGHMFSVLKDSRKSDTSGISS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]