| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is pstS [H]
Identifier: 59712593
GI number: 59712593
Start: 2219626
End: 2220615
Strand: Reverse
Name: pstS [H]
Synonym: VF_1986
Alternate gene names: 59712593
Gene position: 2220615-2219626 (Counterclockwise)
Preceding gene: 59712594
Following gene: 59712592
Centisome position: 76.64
GC content: 39.49
Gene sequence:
>990_bases ATGATTAATATGCAAAGTAGAATTATAAAGTGGTTTAAGGGATTCTTCCCTGTAGGATTACTTTGGTTGTGCTTTGCAAA TAATGGTTTAGCTGATGAGGGGACACTTGCTCCTTATGAGAGAGTGTCGGGTATTTCTGGCAATTTATCTTCAATTGGTT CTGATACGTTAGCAAATATGATGACGCTATGGGCTGAAGATTTTCAACGTATTTACCCTAGAGTTCATATACAAATTCAA GCATCAGGTTCTTCGACCGCAGCGCCAGCTCTTATTGAAAGTACTGCGCAATTTGGACCCATGAGCCGAAAAATGCGGCA AAGTGAAAAAGCCGCATTTGAAAGACAATTTGGTTATCCTCCAACTGAAATCCGAGTCGCAATTGATGCCCTCGGAATTT TTGTTCATCAGGATAACCCAATTAAAGGACTCAATTTTTCTCAGCTTGATGCTATCTTTTCTGCCACTTTGCGTTGTGGT GCTTTAAAGTCGATCAGCCGCTGGCAAGAGCTTGGGATACATACCAGTTGGGCAAAACATCGAATTCAACTATTTGGTCG AAACTCAGTCTCTGGCACCTATGGATACTTTAAAAATAACGCACTATGTAATGGTGATTTTAAAGTTAACGTTAATGAGC AACCTGGTTCAGCCTCTGTGGTTCAAGGAATTTCAGCCTCTTTAAATGGTATTGGTTACTCTGGTGTTGGTTATCAAATG TCAGGGGTAAAACTCTTACCTATCAGTAGAACTGGAACCGATTATATTGAACCAACCACAGACAATATTATTAACGGGCA ATACCCATTAGCGCGTTTCTTATATATTTACATAAATAAACCGCCAACCGCAAAGTTGCCCCCTCTTGATGCTGAGTTTA TTCGCTATATGTTATCTAGAGAAGGGCAAGATAGGGTTGAGCAAGATGGCTATATTGCTTTGCCTGAACGATTTGTTTTA CAAGAATTATCTAAATTAGATTTGCACTAA
Upstream 100 bases:
>100_bases ATCATGACTCTCAGCTTGAAATAAAAAGTAAGTTAGGAAAAGGCAGTACTTTCTCATTTACATTACCTAAAAAACTCATT CTTTAAGTAAGTACAGAATC
Downstream 100 bases:
>100_bases TATGAAACTTGGCCGATTTAAGTCGGTTGATTTTGTTTGTCATTATAGTGTCACTCCTATAATGAAGAATACATTTTATC CACATTATAAAAATAGAGGT
Product: phosphate-binding protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MINMQSRIIKWFKGFFPVGLLWLCFANNGLADEGTLAPYERVSGISGNLSSIGSDTLANMMTLWAEDFQRIYPRVHIQIQ ASGSSTAAPALIESTAQFGPMSRKMRQSEKAAFERQFGYPPTEIRVAIDALGIFVHQDNPIKGLNFSQLDAIFSATLRCG ALKSISRWQELGIHTSWAKHRIQLFGRNSVSGTYGYFKNNALCNGDFKVNVNEQPGSASVVQGISASLNGIGYSGVGYQM SGVKLLPISRTGTDYIEPTTDNIINGQYPLARFLYIYINKPPTAKLPPLDAEFIRYMLSREGQDRVEQDGYIALPERFVL QELSKLDLH
Sequences:
>Translated_329_residues MINMQSRIIKWFKGFFPVGLLWLCFANNGLADEGTLAPYERVSGISGNLSSIGSDTLANMMTLWAEDFQRIYPRVHIQIQ ASGSSTAAPALIESTAQFGPMSRKMRQSEKAAFERQFGYPPTEIRVAIDALGIFVHQDNPIKGLNFSQLDAIFSATLRCG ALKSISRWQELGIHTSWAKHRIQLFGRNSVSGTYGYFKNNALCNGDFKVNVNEQPGSASVVQGISASLNGIGYSGVGYQM SGVKLLPISRTGTDYIEPTTDNIINGQYPLARFLYIYINKPPTAKLPPLDAEFIRYMLSREGQDRVEQDGYIALPERFVL QELSKLDLH >Mature_329_residues MINMQSRIIKWFKGFFPVGLLWLCFANNGLADEGTLAPYERVSGISGNLSSIGSDTLANMMTLWAEDFQRIYPRVHIQIQ ASGSSTAAPALIESTAQFGPMSRKMRQSEKAAFERQFGYPPTEIRVAIDALGIFVHQDNPIKGLNFSQLDAIFSATLRCG ALKSISRWQELGIHTSWAKHRIQLFGRNSVSGTYGYFKNNALCNGDFKVNVNEQPGSASVVQGISASLNGIGYSGVGYQM SGVKLLPISRTGTDYIEPTTDNIINGQYPLARFLYIYINKPPTAKLPPLDAEFIRYMLSREGQDRVEQDGYIALPERFVL QELSKLDLH
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36548; Mature: 36548
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINMQSRIIKWFKGFFPVGLLWLCFANNGLADEGTLAPYERVSGISGNLSSIGSDTLANM CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHH MTLWAEDFQRIYPRVHIQIQASGSSTAAPALIESTAQFGPMSRKMRQSEKAAFERQFGYP HHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC PTEIRVAIDALGIFVHQDNPIKGLNFSQLDAIFSATLRCGALKSISRWQELGIHTSWAKH CHHHEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RIQLFGRNSVSGTYGYFKNNALCNGDFKVNVNEQPGSASVVQGISASLNGIGYSGVGYQM HHHEEECCCCCCCCCEECCCEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEE SGVKLLPISRTGTDYIEPTTDNIINGQYPLARFLYIYINKPPTAKLPPLDAEFIRYMLSR CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCC EGQDRVEQDGYIALPERFVLQELSKLDLH CCHHHHCCCCEEECCHHHHHHHHHHHCCC >Mature Secondary Structure MINMQSRIIKWFKGFFPVGLLWLCFANNGLADEGTLAPYERVSGISGNLSSIGSDTLANM CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHH MTLWAEDFQRIYPRVHIQIQASGSSTAAPALIESTAQFGPMSRKMRQSEKAAFERQFGYP HHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC PTEIRVAIDALGIFVHQDNPIKGLNFSQLDAIFSATLRCGALKSISRWQELGIHTSWAKH CHHHEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH RIQLFGRNSVSGTYGYFKNNALCNGDFKVNVNEQPGSASVVQGISASLNGIGYSGVGYQM HHHEEECCCCCCCCCEECCCEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEE SGVKLLPISRTGTDYIEPTTDNIINGQYPLARFLYIYINKPPTAKLPPLDAEFIRYMLSR CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCC EGQDRVEQDGYIALPERFVLQELSKLDLH CCHHHHCCCCEEECCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA