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The map label for this gene is yafD [C]

Identifier: 59712548

GI number: 59712548

Start: 2170075

End: 2170941

Strand: Reverse

Name: yafD [C]

Synonym: VF_1941

Alternate gene names: 59712548

Gene position: 2170941-2170075 (Counterclockwise)

Preceding gene: 59712549

Following gene: 59712544

Centisome position: 74.92

GC content: 38.06

Gene sequence:

>867_bases
ATGAAAAAGAAAACGATTGTGCTATCTGGTATCGCTTTTGTGATTACCGCGGCTTTAGTGGCAAAAGCCATAATCTTTAC
GGTGCCTAAATCTCCTGAGTTTATTGAATTATCTCAAACTCAAATATCTGCTCAGCCTAGTTATCAATCGGGTTGTGAGA
CGTTTCCAGCTTCAGCTCCTTTAGATCGTAATGGAGAGTTAAGTGTATTGGTATGGAACATATATAAGCAGCAAAATGAA
GGGTGGAAAAAAGCATTAATTGAATTGTCGAATAAAACTGACTTAGTGCTATTACAAGAGGCGAGTTTAACCCCTGAGTT
GAAAGAATTTGTTGTTAATAAACGGTATTCGGCAGAATTAGTTCGTGCTTTTGATGTGTTTGATACCAGTGCAGGGGTAT
TAAGCCTTGCTAAAGAACAAGCACTTAGAGTGTGTGCTCATACTGTTGTTGAACCATGGTTAAGATTACCTAAATCTGCA
CTATTATCCGAATACCCATTATCGAATGGACAAGAATTAATGGTGATTAACATCCATGCAATTAACTTCACTATTGGAAC
GGAAGACTATCAGCAACAGATAGCGTCTTTATCTAAAGAAGTGAGTCGTCATAGTGGTCCTATGATCATTGCTGGTGATT
TTAATACGTGGAGTGAAGCTCGTTTAGCGACATTAAGAAAGCAAGTTGAAGAGTTGGATATGAAAGAAGTGATTTTTTCG
CCAGATGAGCGAATGCGCTTTATGACAGGGTTAGCGTTAGATCATATTTTTTATCGAGGGTTAGATATAAAAGAAGCGCG
CTCGATAAAGAGTCACGCTTCTGATCATAATCCATTACAAGCGATATTTAGCCTGAAAAAGCAGTAA

Upstream 100 bases:

>100_bases
CATACTAATGTGATGATTGTTGTTCATTATTGAGCTGAAATACAGTGATTGTATTGGTGTTAATAGAAGGAAGGAGTGAT
GAGTCACTCCTTTTCTGTTT

Downstream 100 bases:

>100_bases
TAAAGCCCCATAATGTAAAACAAGTTATCCAAGGAAGGATGGCAATAATAAGTGATTTAGAACGATCTAAATCAGTCCAC
GCCCCAAGAGCCGCATAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MKKKTIVLSGIAFVITAALVAKAIIFTVPKSPEFIELSQTQISAQPSYQSGCETFPASAPLDRNGELSVLVWNIYKQQNE
GWKKALIELSNKTDLVLLQEASLTPELKEFVVNKRYSAELVRAFDVFDTSAGVLSLAKEQALRVCAHTVVEPWLRLPKSA
LLSEYPLSNGQELMVINIHAINFTIGTEDYQQQIASLSKEVSRHSGPMIIAGDFNTWSEARLATLRKQVEELDMKEVIFS
PDERMRFMTGLALDHIFYRGLDIKEARSIKSHASDHNPLQAIFSLKKQ

Sequences:

>Translated_288_residues
MKKKTIVLSGIAFVITAALVAKAIIFTVPKSPEFIELSQTQISAQPSYQSGCETFPASAPLDRNGELSVLVWNIYKQQNE
GWKKALIELSNKTDLVLLQEASLTPELKEFVVNKRYSAELVRAFDVFDTSAGVLSLAKEQALRVCAHTVVEPWLRLPKSA
LLSEYPLSNGQELMVINIHAINFTIGTEDYQQQIASLSKEVSRHSGPMIIAGDFNTWSEARLATLRKQVEELDMKEVIFS
PDERMRFMTGLALDHIFYRGLDIKEARSIKSHASDHNPLQAIFSLKKQ
>Mature_288_residues
MKKKTIVLSGIAFVITAALVAKAIIFTVPKSPEFIELSQTQISAQPSYQSGCETFPASAPLDRNGELSVLVWNIYKQQNE
GWKKALIELSNKTDLVLLQEASLTPELKEFVVNKRYSAELVRAFDVFDTSAGVLSLAKEQALRVCAHTVVEPWLRLPKSA
LLSEYPLSNGQELMVINIHAINFTIGTEDYQQQIASLSKEVSRHSGPMIIAGDFNTWSEARLATLRKQVEELDMKEVIFS
PDERMRFMTGLALDHIFYRGLDIKEARSIKSHASDHNPLQAIFSLKKQ

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=241, Percent_Identity=41.49377593361, Blast_Score=199, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 32281; Mature: 32281

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTIVLSGIAFVITAALVAKAIIFTVPKSPEFIELSQTQISAQPSYQSGCETFPASAP
CCCCEEEEHHHHHHHHHHHHHHHHHEECCCCCCEEEECHHHHCCCCCHHHCCCCCCCCCC
LDRNGELSVLVWNIYKQQNEGWKKALIELSNKTDLVLLQEASLTPELKEFVVNKRYSAEL
CCCCCCEEEEEEEEHHHHCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHH
VRAFDVFDTSAGVLSLAKEQALRVCAHTVVEPWLRLPKSALLSEYPLSNGQELMVINIHA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEEEE
INFTIGTEDYQQQIASLSKEVSRHSGPMIIAGDFNTWSEARLATLRKQVEELDMKEVIFS
EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHCC
PDERMRFMTGLALDHIFYRGLDIKEARSIKSHASDHNPLQAIFSLKKQ
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKKKTIVLSGIAFVITAALVAKAIIFTVPKSPEFIELSQTQISAQPSYQSGCETFPASAP
CCCCEEEEHHHHHHHHHHHHHHHHHEECCCCCCEEEECHHHHCCCCCHHHCCCCCCCCCC
LDRNGELSVLVWNIYKQQNEGWKKALIELSNKTDLVLLQEASLTPELKEFVVNKRYSAEL
CCCCCCEEEEEEEEHHHHCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHH
VRAFDVFDTSAGVLSLAKEQALRVCAHTVVEPWLRLPKSALLSEYPLSNGQELMVINIHA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEEEE
INFTIGTEDYQQQIASLSKEVSRHSGPMIIAGDFNTWSEARLATLRKQVEELDMKEVIFS
EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHCC
PDERMRFMTGLALDHIFYRGLDIKEARSIKSHASDHNPLQAIFSLKKQ
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA