Click here to switch to the map view.

The map label for this gene is yafS [H]

Identifier: 59712544

GI number: 59712544

Start: 2166211

End: 2166954

Strand: Reverse

Name: yafS [H]

Synonym: VF_1937

Alternate gene names: 59712544

Gene position: 2166954-2166211 (Counterclockwise)

Preceding gene: 59712548

Following gene: 59712542

Centisome position: 74.79

GC content: 38.04

Gene sequence:

>744_bases
TTGATTAAGCCAGCACTGCTTGATAAAAAAATTGAAAAACCACATTCATGGGAAGATATCCCTCATGGTGAGTGGATTTG
TGAGCTTATTCAATCACGTTTGGATGAGTGGTGTCCCAAACTATTCGGTTACCATATGCTCAAAATTGGTGGACTAAGTG
CTGAGTTAGATAGTCGCTTTTGTAATATTAAACACCAAGTTAACCTAGATAACAAAAATTCGCTAAGAAATATTACTGCA
GAATTGCCTCAATTACCGTTTCTTGAAAAAAGTATAGATGCTTGTGTATTAGCTCATCAGTTAGATTACTCATCAGACCC
TCATCAATTACTCAGAGAAATAGATCGAGTGCTTATTGGTGACGGTTATGTCATCTTGACCGGTTTTAACCCTATGAGTG
CTATTGGGCTTGCGAGTTTGTTTCCATGGCGTAAAAATAATTTACCTTGGAGTGGACGCATGTTTACTCCTCACCGAATT
AAAGATTGGTTGAGTGTATTGAATTTTGAAGTGGTGTACAGTGATTGTTTTGCTTTAGCTCCACTGACTCGTTATCGCAC
GATGTGGACATGGTTTGAAGGGCTAGGTGGTGATGCTGTTAAGCCTATTAGTGGTATTTATTTTATTGTTGCGAGAAAAA
GAACGTATCCATTAAGACCAATAAAATCAGCTTGGAAAAAGAAGCCAAAGTTGGCTCCTATTTCTGTTGCTCAAACCCGC
CAAGGAAAAATGAAATCTGATTAA

Upstream 100 bases:

>100_bases
ATTAACCAAATGTAATTATCATTAAATGCAGGTATGCTTTTTACTGATAGCATTCACATTTCTCCAAACTTTTTATTATT
CGATGGTATAGGTAACGATC

Downstream 100 bases:

>100_bases
CCAGGATAACCCGTATCATCTTGAGTCGGGTTTTCGGCTGCGGTTCTTGCTAATTCATCACACATCTCGTTCTCTCGATG
ACCTGCGTGACCTTTTACCC

Product: S-adenosyl-L-methionine-dependent methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MIKPALLDKKIEKPHSWEDIPHGEWICELIQSRLDEWCPKLFGYHMLKIGGLSAELDSRFCNIKHQVNLDNKNSLRNITA
ELPQLPFLEKSIDACVLAHQLDYSSDPHQLLREIDRVLIGDGYVILTGFNPMSAIGLASLFPWRKNNLPWSGRMFTPHRI
KDWLSVLNFEVVYSDCFALAPLTRYRTMWTWFEGLGGDAVKPISGIYFIVARKRTYPLRPIKSAWKKKPKLAPISVAQTR
QGKMKSD

Sequences:

>Translated_247_residues
MIKPALLDKKIEKPHSWEDIPHGEWICELIQSRLDEWCPKLFGYHMLKIGGLSAELDSRFCNIKHQVNLDNKNSLRNITA
ELPQLPFLEKSIDACVLAHQLDYSSDPHQLLREIDRVLIGDGYVILTGFNPMSAIGLASLFPWRKNNLPWSGRMFTPHRI
KDWLSVLNFEVVYSDCFALAPLTRYRTMWTWFEGLGGDAVKPISGIYFIVARKRTYPLRPIKSAWKKKPKLAPISVAQTR
QGKMKSD
>Mature_247_residues
MIKPALLDKKIEKPHSWEDIPHGEWICELIQSRLDEWCPKLFGYHMLKIGGLSAELDSRFCNIKHQVNLDNKNSLRNITA
ELPQLPFLEKSIDACVLAHQLDYSSDPHQLLREIDRVLIGDGYVILTGFNPMSAIGLASLFPWRKNNLPWSGRMFTPHRI
KDWLSVLNFEVVYSDCFALAPLTRYRTMWTWFEGLGGDAVKPISGIYFIVARKRTYPLRPIKSAWKKKPKLAPISVAQTR
QGKMKSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081700, Length=245, Percent_Identity=41.2244897959184, Blast_Score=184, Evalue=7e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 28433; Mature: 28433

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKPALLDKKIEKPHSWEDIPHGEWICELIQSRLDEWCPKLFGYHMLKIGGLSAELDSRF
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHH
CNIKHQVNLDNKNSLRNITAELPQLPFLEKSIDACVLAHQLDYSSDPHQLLREIDRVLIG
HCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
DGYVILTGFNPMSAIGLASLFPWRKNNLPWSGRMFTPHRIKDWLSVLNFEVVYSDCFALA
CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PLTRYRTMWTWFEGLGGDAVKPISGIYFIVARKRTYPLRPIKSAWKKKPKLAPISVAQTR
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHCC
QGKMKSD
CCCCCCC
>Mature Secondary Structure
MIKPALLDKKIEKPHSWEDIPHGEWICELIQSRLDEWCPKLFGYHMLKIGGLSAELDSRF
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHH
CNIKHQVNLDNKNSLRNITAELPQLPFLEKSIDACVLAHQLDYSSDPHQLLREIDRVLIG
HCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
DGYVILTGFNPMSAIGLASLFPWRKNNLPWSGRMFTPHRIKDWLSVLNFEVVYSDCFALA
CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PLTRYRTMWTWFEGLGGDAVKPISGIYFIVARKRTYPLRPIKSAWKKKPKLAPISVAQTR
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHCC
QGKMKSD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]