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The map label for this gene is flgH

Identifier: 59712478

GI number: 59712478

Start: 2106402

End: 2107193

Strand: Reverse

Name: flgH

Synonym: VF_1871

Alternate gene names: 59712478

Gene position: 2107193-2106402 (Counterclockwise)

Preceding gene: 59712479

Following gene: 59712477

Centisome position: 72.72

GC content: 39.14

Gene sequence:

>792_bases
ATGAAACGTCTTCTTTGTTTACTGCTATTAACAACATTAACTGGTTGTGAAACGCTGCTAATTAAAAATCCGAGCGCACA
AGAAAGCGAGGTGACTTCTGCTACAACAAATGTTGATGCAGTTGAAGGTGATAAAGCCAAAGAAGAAGACTCAGGTATTA
TCGATACACTACGTGGTCGTAATGATCCTATTGCAGGGGATCCTGCGTGGGCACCGATTCATCCTAAAGAAAAACCAGAA
CATTATGCAGCTGCTACAGGTTCTCTATTTAATGTAGATCATGCACAAGATATGTACGATGATACTAAGCCTCGTGGGTT
AGGTGATATCGTAACCGTTATGCTTGCTGAAAATACAAAAGCGGCAAAAAGTGCAGATGCTGAATTATCGAAATCAAATG
ATTCAAGCATGGATCCATTGCAAGTAGGTGGACAAGAGCTGCAAATGGGTGGCCAATATAACTTTTCTTATGAGTTATCA
AATGACAATAACTTCACAGGTAACACATCGGCTAATCAAAGTAATAGCTTAAGTGGTTCAATTACTGTGGAAGTCATCGA
AGTATTATCAAATGGCAACTTATTGATCCGTGGTGAGAAATGGTTAACGCTCAATACGGGTGATGAGTACATTCGATTAA
GCGGTACAATTCGCCCAGATGATATTAATTTTGATAACACCATTGATTCGACACGAATCTCAAATGCTCGTATTCAATAT
TCAGGTACGGGTGATCAACAAGATATGCAAGAACCTGGATTCTTGGCACGATTCTTTAATGTAGCACTATAA

Upstream 100 bases:

>100_bases
GATCGAAGCGCAACGTGTTTACGAAATGAACTCTAAAGTTATTTCTGCTGTTGATAAGATGGCAAGCTTTGTTAACCAAC
AACTGTAATTGGTGATTAGG

Downstream 100 bases:

>100_bases
TAATGACGAATCGTTGGAGTTTTGACGTGAATAAAAATCTAGTTACTGTACTTTTTACTTGGTTATGCCTAAGTATATCT
ACAGCACACGCTGCACGTAT

Product: flagellar basal body L-ring protein

Products: NA

Alternate protein names: Basal body L-ring protein

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKRLLCLLLLTTLTGCETLLIKNPSAQESEVTSATTNVDAVEGDKAKEEDSGIIDTLRGRNDPIAGDPAWAPIHPKEKPE
HYAAATGSLFNVDHAQDMYDDTKPRGLGDIVTVMLAENTKAAKSADAELSKSNDSSMDPLQVGGQELQMGGQYNFSYELS
NDNNFTGNTSANQSNSLSGSITVEVIEVLSNGNLLIRGEKWLTLNTGDEYIRLSGTIRPDDINFDNTIDSTRISNARIQY
SGTGDQQDMQEPGFLARFFNVAL

Sequences:

>Translated_263_residues
MKRLLCLLLLTTLTGCETLLIKNPSAQESEVTSATTNVDAVEGDKAKEEDSGIIDTLRGRNDPIAGDPAWAPIHPKEKPE
HYAAATGSLFNVDHAQDMYDDTKPRGLGDIVTVMLAENTKAAKSADAELSKSNDSSMDPLQVGGQELQMGGQYNFSYELS
NDNNFTGNTSANQSNSLSGSITVEVIEVLSNGNLLIRGEKWLTLNTGDEYIRLSGTIRPDDINFDNTIDSTRISNARIQY
SGTGDQQDMQEPGFLARFFNVAL
>Mature_263_residues
MKRLLCLLLLTTLTGCETLLIKNPSAQESEVTSATTNVDAVEGDKAKEEDSGIIDTLRGRNDPIAGDPAWAPIHPKEKPE
HYAAATGSLFNVDHAQDMYDDTKPRGLGDIVTVMLAENTKAAKSADAELSKSNDSSMDPLQVGGQELQMGGQYNFSYELS
NDNNFTGNTSANQSNSLSGSITVEVIEVLSNGNLLIRGEKWLTLNTGDEYIRLSGTIRPDDINFDNTIDSTRISNARIQY
SGTGDQQDMQEPGFLARFFNVAL

Specific function: Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation

COG id: COG2063

COG function: function code N; Flagellar basal body L-ring protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgH family

Homologues:

Organism=Escherichia coli, GI1787319, Length=204, Percent_Identity=36.2745098039216, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGH_VIBF1 (Q5E3N0)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_205254.1
- STRING:   Q5E3N0
- GeneID:   3278983
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_1871
- NMPDR:   fig|312309.3.peg.1871
- eggNOG:   COG2063
- HOGENOM:   HBG507455
- OMA:   IAGEKQI
- PhylomeDB:   Q5E3N0
- ProtClustDB:   PRK00249
- BioCyc:   VFIS312309:VF1871-MONOMER
- HAMAP:   MF_00415
- InterPro:   IPR000527
- PRINTS:   PR01008

Pfam domain/function: PF02107 FlgH

EC number: NA

Molecular weight: Translated: 28555; Mature: 28555

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLCLLLLTTLTGCETLLIKNPSAQESEVTSATTNVDAVEGDKAKEEDSGIIDTLRGR
CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCC
NDPIAGDPAWAPIHPKEKPEHYAAATGSLFNVDHAQDMYDDTKPRGLGDIVTVMLAENTK
CCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCHHHHHHCCCCCCCCCEEEEEEECCCC
AAKSADAELSKSNDSSMDPLQVGGQELQMGGQYNFSYELSNDNNFTGNTSANQSNSLSGS
HHHCCCCHHCCCCCCCCCHHHHCCHHEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
ITVEVIEVLSNGNLLIRGEKWLTLNTGDEYIRLSGTIRPDDINFDNTIDSTRISNARIQY
CCEEEEHHHHCCCEEEECCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
SGTGDQQDMQEPGFLARFFNVAL
CCCCCHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MKRLLCLLLLTTLTGCETLLIKNPSAQESEVTSATTNVDAVEGDKAKEEDSGIIDTLRGR
CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCC
NDPIAGDPAWAPIHPKEKPEHYAAATGSLFNVDHAQDMYDDTKPRGLGDIVTVMLAENTK
CCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCHHHHHHCCCCCCCCCEEEEEEECCCC
AAKSADAELSKSNDSSMDPLQVGGQELQMGGQYNFSYELSNDNNFTGNTSANQSNSLSGS
HHHCCCCHHCCCCCCCCCHHHHCCHHEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
ITVEVIEVLSNGNLLIRGEKWLTLNTGDEYIRLSGTIRPDDINFDNTIDSTRISNARIQY
CCEEEEHHHHCCCEEEECCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
SGTGDQQDMQEPGFLARFFNVAL
CCCCCHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA