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The map label for this gene is ccmH [H]

Identifier: 59712424

GI number: 59712424

Start: 2053062

End: 2053577

Strand: Reverse

Name: ccmH [H]

Synonym: VF_1817

Alternate gene names: 59712424

Gene position: 2053577-2053062 (Counterclockwise)

Preceding gene: 59712425

Following gene: 59712423

Centisome position: 70.87

GC content: 36.05

Gene sequence:

>516_bases
ATGAAATTAAACCTACGTAAATTAGGTCTTCGCAGTTTTGCAGTGATTGCATTTAGTTTATTTGCAGTGCAAGTAAGCTA
CGCAACGATTGACTTATATGAGTTTGATTCGCCAGAACAAGAGCAGCAATTTAAAGAATTAGGTCAGACTTTACGTTGTC
CAAAATGTCAAAATAACAATATTGCAGATTCAAGTGCCGAGTTGGCTCAAGACATGCGCCATAAAGTGTATGAAATGACT
AAACAAGGTAAATCTGATGATGAAATTATTTCATACATGATTGATCGTTATGGAAACTTTGTAACCTATGATCCACCGTT
AACGGCTGGAACACTTGTTTTATGGTTAGGTCCATTAAGTGTCTTAGTGTTTGGTTTTGGTCTTATTGTGATTCGCAGTC
GTAAAACGGCAGCAGAAAAAGAAGCAAAATCTGAAGAGTGGGATAACGAACATGAAGAACGTTTGAACGCTTTATTAAAT
GAAGACAATAATGACAATGGGAAGGTAAACAAATGA

Upstream 100 bases:

>100_bases
ATGGCATTGTTCGCTACCGTCATGTTGGTGATGTTAATGAGCGTAATTGGAATGAAACACTAAAACCAATGTACGACCAA
CTTGTTGCGGAGGCGAAATA

Downstream 100 bases:

>100_bases
CTTTGTTTTGGATTTCAACCTTAGCCCTGATTTTTGTTGGCGTGTTTTTTATTATTCTTCCGCTATGGAAAGCAAGAGCG
CAAGATGATGAAGCTCGTCG

Product: cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKLNLRKLGLRSFAVIAFSLFAVQVSYATIDLYEFDSPEQEQQFKELGQTLRCPKCQNNNIADSSAELAQDMRHKVYEMT
KQGKSDDEIISYMIDRYGNFVTYDPPLTAGTLVLWLGPLSVLVFGFGLIVIRSRKTAAEKEAKSEEWDNEHEERLNALLN
EDNNDNGKVNK

Sequences:

>Translated_171_residues
MKLNLRKLGLRSFAVIAFSLFAVQVSYATIDLYEFDSPEQEQQFKELGQTLRCPKCQNNNIADSSAELAQDMRHKVYEMT
KQGKSDDEIISYMIDRYGNFVTYDPPLTAGTLVLWLGPLSVLVFGFGLIVIRSRKTAAEKEAKSEEWDNEHEERLNALLN
EDNNDNGKVNK
>Mature_171_residues
MKLNLRKLGLRSFAVIAFSLFAVQVSYATIDLYEFDSPEQEQQFKELGQTLRCPKCQNNNIADSSAELAQDMRHKVYEMT
KQGKSDDEIISYMIDRYGNFVTYDPPLTAGTLVLWLGPLSVLVFGFGLIVIRSRKTAAEKEAKSEEWDNEHEERLNALLN
EDNNDNGKVNK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=106, Percent_Identity=56.6037735849057, Blast_Score=132, Evalue=9e-33,
Organism=Escherichia coli, GI1790512, Length=94, Percent_Identity=45.7446808510638, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 19501; Mature: 19501

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNLRKLGLRSFAVIAFSLFAVQVSYATIDLYEFDSPEQEQQFKELGQTLRCPKCQNNN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
IADSSAELAQDMRHKVYEMTKQGKSDDEIISYMIDRYGNFVTYDPPLTAGTLVLWLGPLS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH
VLVFGFGLIVIRSRKTAAEKEAKSEEWDNEHEERLNALLNEDNNDNGKVNK
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKLNLRKLGLRSFAVIAFSLFAVQVSYATIDLYEFDSPEQEQQFKELGQTLRCPKCQNNN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
IADSSAELAQDMRHKVYEMTKQGKSDDEIISYMIDRYGNFVTYDPPLTAGTLVLWLGPLS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH
VLVFGFGLIVIRSRKTAAEKEAKSEEWDNEHEERLNALLNEDNNDNGKVNK
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]