Click here to switch to the map view.

The map label for this gene is ccmI [H]

Identifier: 59712423

GI number: 59712423

Start: 2051848

End: 2053065

Strand: Reverse

Name: ccmI [H]

Synonym: VF_1816

Alternate gene names: 59712423

Gene position: 2053065-2051848 (Counterclockwise)

Preceding gene: 59712424

Following gene: 59712422

Centisome position: 70.86

GC content: 37.27

Gene sequence:

>1218_bases
ATGACTTTGTTTTGGATTTCAACCTTAGCCCTGATTTTTGTTGGCGTGTTTTTTATTATTCTTCCGCTATGGAAAGCAAG
AGCGCAAGATGATGAAGCTCGTCGAGATGAATTAAATAAAGCGTTTTATAAAGATCGCTTAGCTGAATTGGAAGAAGAAG
ATGCTGAAGGTCTTGTGAATAACCAAGAAGAGTTAATCACAGAGCTTAAGCAATCATTGCTTGATGATATTCCAGTAAAA
GAAAAAGCACAGCAAGACAGTTTAAACGCAAGATTATTTATTCTTCCGTCGATAATTGTACTTGTCGCTATTTCTTACGG
TTTATATTTTAAATTTGGCAATATCGATAAAGTAGAAAAGTGGCAAGAAGTAAGTGCACGCTTACCTGAATTATCACAAC
AATTACTTGATCCAGAAAGTGCAGGTTTAACAGACTCTGAAATCAGAGATATTACGTTAGCGCTGCGAACTAAATTGTAT
CACGAACCTGATGATGCAATGGGTTGGTTGCTACTTGGTCGTATTGGTATGATGAATCGTGACATTGATACATCAGTTGG
TGCAATGAAAAAAGCCTATGCACTTAAACCAAAAGATACTGAGATTAAGTTGGGTTATGCTCAATCATTAATGTTAAGTG
GTAATGAAGCAAAAGCAGAGCAAGCGAAACAATTACTTCGTGAAGCTCTACGTGAAGACTCTACAAATTTACGTGCTTTA
TCATTACTTGCTTTCTACTCATTTGAGAATCAAGACTATAAAGGCGCTATTTCTGCATGGAAAGCAATGCAGATGTTGAT
TGGCCCTGATGATTCTCGTTATGAAATGTTAGTTCGTAGTATTGAACGTGCACAATCTAAATTAAACCCTGAAGCAACAT
TAGAGAAGCAGGTTCCTGTTACTATTAATCTGGGTAATAACGTGCAACTACCAAAGCAGGGATTTGTGATTGTATCAATT
CACCCTGCAGATGGTTCACCAATGCCGATTGCAGCAGCAAGAGCACCATTAAGTCGCTTCCCGCTTAAAATCATGATGTC
AGATGAAAACAACATGATAGAACAGCGTAAATTGTCAGATATGGAGAGCTTTATTGTTCGCGCTCGTATTGACCAAGATG
GCAATGTAGCAACAAAATCAGGTGACTGGTACGGTGAAAGTGAAGTAAGTACATTAGGTAAAAATGTATCACTAAGTATT
GATAAGCAATATCAATAA

Upstream 100 bases:

>100_bases
CAGAAAAAGAAGCAAAATCTGAAGAGTGGGATAACGAACATGAAGAACGTTTGAACGCTTTATTAAATGAAGACAATAAT
GACAATGGGAAGGTAAACAA

Downstream 100 bases:

>100_bases
TACATCACAAGTGTCATACTAGAACGGGCAGAGGCGTTGCGCTTCTGCCCGTTTTTTATCATCTATAATAATAAAATACA
TATAGTTATACCAATCATAC

Product: cytochrome c-type biogenesis protein CcmI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTLFWISTLALIFVGVFFIILPLWKARAQDDEARRDELNKAFYKDRLAELEEEDAEGLVNNQEELITELKQSLLDDIPVK
EKAQQDSLNARLFILPSIIVLVAISYGLYFKFGNIDKVEKWQEVSARLPELSQQLLDPESAGLTDSEIRDITLALRTKLY
HEPDDAMGWLLLGRIGMMNRDIDTSVGAMKKAYALKPKDTEIKLGYAQSLMLSGNEAKAEQAKQLLREALREDSTNLRAL
SLLAFYSFENQDYKGAISAWKAMQMLIGPDDSRYEMLVRSIERAQSKLNPEATLEKQVPVTINLGNNVQLPKQGFVIVSI
HPADGSPMPIAAARAPLSRFPLKIMMSDENNMIEQRKLSDMESFIVRARIDQDGNVATKSGDWYGESEVSTLGKNVSLSI
DKQYQ

Sequences:

>Translated_405_residues
MTLFWISTLALIFVGVFFIILPLWKARAQDDEARRDELNKAFYKDRLAELEEEDAEGLVNNQEELITELKQSLLDDIPVK
EKAQQDSLNARLFILPSIIVLVAISYGLYFKFGNIDKVEKWQEVSARLPELSQQLLDPESAGLTDSEIRDITLALRTKLY
HEPDDAMGWLLLGRIGMMNRDIDTSVGAMKKAYALKPKDTEIKLGYAQSLMLSGNEAKAEQAKQLLREALREDSTNLRAL
SLLAFYSFENQDYKGAISAWKAMQMLIGPDDSRYEMLVRSIERAQSKLNPEATLEKQVPVTINLGNNVQLPKQGFVIVSI
HPADGSPMPIAAARAPLSRFPLKIMMSDENNMIEQRKLSDMESFIVRARIDQDGNVATKSGDWYGESEVSTLGKNVSLSI
DKQYQ
>Mature_404_residues
TLFWISTLALIFVGVFFIILPLWKARAQDDEARRDELNKAFYKDRLAELEEEDAEGLVNNQEELITELKQSLLDDIPVKE
KAQQDSLNARLFILPSIIVLVAISYGLYFKFGNIDKVEKWQEVSARLPELSQQLLDPESAGLTDSEIRDITLALRTKLYH
EPDDAMGWLLLGRIGMMNRDIDTSVGAMKKAYALKPKDTEIKLGYAQSLMLSGNEAKAEQAKQLLREALREDSTNLRALS
LLAFYSFENQDYKGAISAWKAMQMLIGPDDSRYEMLVRSIERAQSKLNPEATLEKQVPVTINLGNNVQLPKQGFVIVSIH
PADGSPMPIAAARAPLSRFPLKIMMSDENNMIEQRKLSDMESFIVRARIDQDGNVATKSGDWYGESEVSTLGKNVSLSID
KQYQ

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=197, Percent_Identity=35.5329949238579, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 45684; Mature: 45553

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFWISTLALIFVGVFFIILPLWKARAQDDEARRDELNKAFYKDRLAELEEEDAEGLVN
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NQEELITELKQSLLDDIPVKEKAQQDSLNARLFILPSIIVLVAISYGLYFKFGNIDKVEK
CHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHEEEECCCHHHHH
WQEVSARLPELSQQLLDPESAGLTDSEIRDITLALRTKLYHEPDDAMGWLLLGRIGMMNR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
DIDTSVGAMKKAYALKPKDTEIKLGYAQSLMLSGNEAKAEQAKQLLREALREDSTNLRAL
CCHHHHHHHHHHHCCCCCCCEEEEEHHHHHEECCCHHHHHHHHHHHHHHHHCCCCCHHHH
SLLAFYSFENQDYKGAISAWKAMQMLIGPDDSRYEMLVRSIERAQSKLNPEATLEKQVPV
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCE
TINLGNNVQLPKQGFVIVSIHPADGSPMPIAAARAPLSRFPLKIMMSDENNMIEQRKLSD
EEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCHHHCCEEEEECCCCCHHHHHHHHH
MESFIVRARIDQDGNVATKSGDWYGESEVSTLGKNVSLSIDKQYQ
HHHHHHHHEECCCCCEEECCCCCCCCHHHHHCCCCEEEEECCCCC
>Mature Secondary Structure 
TLFWISTLALIFVGVFFIILPLWKARAQDDEARRDELNKAFYKDRLAELEEEDAEGLVN
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NQEELITELKQSLLDDIPVKEKAQQDSLNARLFILPSIIVLVAISYGLYFKFGNIDKVEK
CHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHEEEECCCHHHHH
WQEVSARLPELSQQLLDPESAGLTDSEIRDITLALRTKLYHEPDDAMGWLLLGRIGMMNR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
DIDTSVGAMKKAYALKPKDTEIKLGYAQSLMLSGNEAKAEQAKQLLREALREDSTNLRAL
CCHHHHHHHHHHHCCCCCCCEEEEEHHHHHEECCCHHHHHHHHHHHHHHHHCCCCCHHHH
SLLAFYSFENQDYKGAISAWKAMQMLIGPDDSRYEMLVRSIERAQSKLNPEATLEKQVPV
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCE
TINLGNNVQLPKQGFVIVSIHPADGSPMPIAAARAPLSRFPLKIMMSDENNMIEQRKLSD
EEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCHHHCCEEEEECCCCCHHHHHHHHH
MESFIVRARIDQDGNVATKSGDWYGESEVSTLGKNVSLSIDKQYQ
HHHHHHHHEECCCCCEEECCCCCCCCHHHHHCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]