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The map label for this gene is yjdF [H]

Identifier: 59712421

GI number: 59712421

Start: 2050225

End: 2050830

Strand: Direct

Name: yjdF [H]

Synonym: VF_1814

Alternate gene names: 59712421

Gene position: 2050225-2050830 (Clockwise)

Preceding gene: 59712420

Following gene: 59712445

Centisome position: 70.76

GC content: 38.45

Gene sequence:

>606_bases
ATGTCTATACCTCAATCCATAAAACAGCAACCTATGCTGCTGAGCCTCACATCTCTTTATTCTGTGATATTTCTTTTTTC
TGCTTTTGAGCCAATATCTCGAGCGGTATGGTTTGCTGAAATTATTCCTGCATTATTAATTTTAGCTGGCATTCTTTACA
TGTCGACACGCTTTCAGTTCAGCAAAACTGCCTTGGTATTTATGTTTATTTGGCTATTTCTTCATACAATTGGCGCTAAA
TATACTTTTGCCGACGTCCCTTTTGATTGGTTTAATAACTTGATTGGGTCTGAGCGAAATAACTTCGATCGAGTCGCACA
CTTCTCAATTGGTTTTTACGCATACCCTATCGCTGAATATCTCATTAAAACAAAGAAATGCTCTACTCCTCTTGCGATGG
CTTTTGGCTTATTCACATTAATGAGTGTTGCTGCTGGATATGAGATTATTGAATGGTGGTATGCCGCTATTGCAGGTGGT
GATGAAGGGATTGCTTTTTTAGGATCTCAAGGGGATATTTGGGATGCGCAGAAAGATATGTTATGTGATACAACCGGCTC
TCTATTTGCTTTATTAATCTTATTTTTCCAGCGGAATAATCGCTAG

Upstream 100 bases:

>100_bases
CTGAAACACTCAATTCTAAATAAATCAACTTGATAGAAACGACTTTCAAGTTACACTTTTTATATTCATTCTTTAAGTGT
GCAACTCGGAGTATTGATTT

Downstream 100 bases:

>100_bases
GTTTCAGGTTTCAGGTTTCAGGTTTCAGGTTTCAGGAGAATACTGACCGTGAAACCTGAAAGACTATTACTGTTTTTACT
CGTCTATTTCATCTAAATAG

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSIPQSIKQQPMLLSLTSLYSVIFLFSAFEPISRAVWFAEIIPALLILAGILYMSTRFQFSKTALVFMFIWLFLHTIGAK
YTFADVPFDWFNNLIGSERNNFDRVAHFSIGFYAYPIAEYLIKTKKCSTPLAMAFGLFTLMSVAAGYEIIEWWYAAIAGG
DEGIAFLGSQGDIWDAQKDMLCDTTGSLFALLILFFQRNNR

Sequences:

>Translated_201_residues
MSIPQSIKQQPMLLSLTSLYSVIFLFSAFEPISRAVWFAEIIPALLILAGILYMSTRFQFSKTALVFMFIWLFLHTIGAK
YTFADVPFDWFNNLIGSERNNFDRVAHFSIGFYAYPIAEYLIKTKKCSTPLAMAFGLFTLMSVAAGYEIIEWWYAAIAGG
DEGIAFLGSQGDIWDAQKDMLCDTTGSLFALLILFFQRNNR
>Mature_200_residues
SIPQSIKQQPMLLSLTSLYSVIFLFSAFEPISRAVWFAEIIPALLILAGILYMSTRFQFSKTALVFMFIWLFLHTIGAKY
TFADVPFDWFNNLIGSERNNFDRVAHFSIGFYAYPIAEYLIKTKKCSTPLAMAFGLFTLMSVAAGYEIIEWWYAAIAGGD
EGIAFLGSQGDIWDAQKDMLCDTTGSLFALLILFFQRNNR

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=198, Percent_Identity=28.7878787878788, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22806; Mature: 22675

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPQSIKQQPMLLSLTSLYSVIFLFSAFEPISRAVWFAEIIPALLILAGILYMSTRFQF
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKTALVFMFIWLFLHTIGAKYTFADVPFDWFNNLIGSERNNFDRVAHFSIGFYAYPIAEY
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LIKTKKCSTPLAMAFGLFTLMSVAAGYEIIEWWYAAIAGGDEGIAFLGSQGDIWDAQKDM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH
LCDTTGSLFALLILFFQRNNR
HHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIPQSIKQQPMLLSLTSLYSVIFLFSAFEPISRAVWFAEIIPALLILAGILYMSTRFQF
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKTALVFMFIWLFLHTIGAKYTFADVPFDWFNNLIGSERNNFDRVAHFSIGFYAYPIAEY
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LIKTKKCSTPLAMAFGLFTLMSVAAGYEIIEWWYAAIAGGDEGIAFLGSQGDIWDAQKDM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH
LCDTTGSLFALLILFFQRNNR
HHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]