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The map label for this gene is yfcN [C]

Identifier: 59712414

GI number: 59712414

Start: 2038556

End: 2039089

Strand: Direct

Name: yfcN [C]

Synonym: VF_1807

Alternate gene names: 59712414

Gene position: 2038556-2039089 (Clockwise)

Preceding gene: 172087729

Following gene: 59712416

Centisome position: 70.35

GC content: 40.07

Gene sequence:

>534_bases
ATGAGCAAAAACGACCACCTATCAGATGACGAACTTTCGCTGTTCCGTGAAGCAGTACAAGGCTCTAAAAAGTTGCAACA
GGATACCATAATCCATCAGCCGAGTAAGAACTTTAGCGACCTACAACAGCAAAGAAAATCATTAAAAGAAGGGAAAAATG
AAGAGTTTTTCTTTTCTGATGAATTTGTACCACTTCTGAGTGAAGATGGTCCAATTCGCTATGCCCGTGATGACGTATCA
AAATACGAAGTAAAACGCTTACGACGTGGCGTATACGTACCTGATGTATTTTTAGATATGCATGGTATGAAACAAGATGA
AGCCAAGCGTGAATTAGGCTCTATGATTGCTTATTGCCTTAAAGAAAATATCTCTTGTGCGAGTGTTATGCATGGTATTG
GCAAACATATTCTTAAACAGAAAGTGCCTCTATGGTTAGCCCAACATCCCGATGTAATGGCTTTTCACCAAGCCCCTCTA
GAGTTTGGTGGTGCAGGTGCCATTCTAGTATTACTCTCAATACCTGATAGATAA

Upstream 100 bases:

>100_bases
TAACGTATGAAGCTCAGCGACCGCCTCTTCTACAAAAATCTTATCCAAAATTGCCCCCAAAACAAGTTATAATACTACTG
TTAATTATTGGAATTTAAAA

Downstream 100 bases:

>100_bases
AAAAAGATCCCACAGCCGTTAAGCTCTGGGATCTTTTTTATTTCATCTGTTTTCTATATGAATTTATGGTTGCTGCAACC
AAAGTAACTCACTTTTCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSKNDHLSDDELSLFREAVQGSKKLQQDTIIHQPSKNFSDLQQQRKSLKEGKNEEFFFSDEFVPLLSEDGPIRYARDDVS
KYEVKRLRRGVYVPDVFLDMHGMKQDEAKRELGSMIAYCLKENISCASVMHGIGKHILKQKVPLWLAQHPDVMAFHQAPL
EFGGAGAILVLLSIPDR

Sequences:

>Translated_177_residues
MSKNDHLSDDELSLFREAVQGSKKLQQDTIIHQPSKNFSDLQQQRKSLKEGKNEEFFFSDEFVPLLSEDGPIRYARDDVS
KYEVKRLRRGVYVPDVFLDMHGMKQDEAKRELGSMIAYCLKENISCASVMHGIGKHILKQKVPLWLAQHPDVMAFHQAPL
EFGGAGAILVLLSIPDR
>Mature_176_residues
SKNDHLSDDELSLFREAVQGSKKLQQDTIIHQPSKNFSDLQQQRKSLKEGKNEEFFFSDEFVPLLSEDGPIRYARDDVSK
YEVKRLRRGVYVPDVFLDMHGMKQDEAKRELGSMIAYCLKENISCASVMHGIGKHILKQKVPLWLAQHPDVMAFHQAPLE
FGGAGAILVLLSIPDR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain

Homologues:

Organism=Escherichia coli, GI1788671, Length=174, Percent_Identity=51.7241379310345, Blast_Score=203, Evalue=6e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1807_VIBF1 (Q5E3U4)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_205190.1
- ProteinModelPortal:   Q5E3U4
- SMR:   Q5E3U4
- STRING:   Q5E3U4
- GeneID:   3279131
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_1807
- NMPDR:   fig|312309.3.peg.1806
- eggNOG:   COG2840
- HOGENOM:   HBG700609
- OMA:   TRYARDD
- PhylomeDB:   Q5E3U4
- ProtClustDB:   PRK04946
- BioCyc:   VFIS312309:VF1807-MONOMER
- HAMAP:   MF_01042
- InterPro:   IPR002625
- InterPro:   IPR022990
- SMART:   SM00463

Pfam domain/function: PF01713 Smr

EC number: NA

Molecular weight: Translated: 20184; Mature: 20053

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNDHLSDDELSLFREAVQGSKKLQQDTIIHQPSKNFSDLQQQRKSLKEGKNEEFFFSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEECC
EFVPLLSEDGPIRYARDDVSKYEVKRLRRGVYVPDVFLDMHGMKQDEAKRELGSMIAYCL
CCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
KENISCASVMHGIGKHILKQKVPLWLAQHPDVMAFHQAPLEFGGAGAILVLLSIPDR
HCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
SKNDHLSDDELSLFREAVQGSKKLQQDTIIHQPSKNFSDLQQQRKSLKEGKNEEFFFSD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEECC
EFVPLLSEDGPIRYARDDVSKYEVKRLRRGVYVPDVFLDMHGMKQDEAKRELGSMIAYCL
CCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
KENISCASVMHGIGKHILKQKVPLWLAQHPDVMAFHQAPLEFGGAGAILVLLSIPDR
HCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA