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The map label for this gene is araC [C]

Identifier: 59712394

GI number: 59712394

Start: 2017200

End: 2018054

Strand: Reverse

Name: araC [C]

Synonym: VF_1787

Alternate gene names: 59712394

Gene position: 2018054-2017200 (Counterclockwise)

Preceding gene: 59712395

Following gene: 59712389

Centisome position: 69.65

GC content: 35.2

Gene sequence:

>855_bases
ATGAAAGCGAATTTAGAACGAGTTCCAATTCGTATTGGTTCTTCTTGGCGATATAAAAAAATTGATGGTGTTGAAAAAAA
TTGTCACTGGCACTTTCATAATGAGTATGAATTGGTGCTATTTCGGAAAAATAATGCCAAGGGAATGGTGGGGCATTTTG
AGAGAGTCATTGAGAAAAATACATTATGGCTGATTCCCCCTAAGATGCCACACGCTATTGAGTTGTTAGAAGAAAAGGAA
CTGCAATGTGAATCTCATATTATTTGGCTACCAAAGGAGTGGGTTGAGAATATGATATTCAGTTGTACAGAGCTAAGAAG
AATGGGGGAACTATTTAAACGTTCTAGTAATGGATTGTGCTTTTCAACTTCGACAGCTGAAAAGGTTTATCAATTGATTG
AAAAGCTATTTAAAGATTCTATTCTTGATGATCTTGGCTATTTAATTCAGATTCTAGGTTGTTTATGTTCTGATAAAGAG
ACTAGACCGCTTCAACTATTTTCAAAGCAAGAGGCCTCGGATAAAGAAGGAAAAGAGAAGATTGACCTTGTTTGCCAGTA
TATTGATGATAATTACCAAAACTCAATTACATTATTGAATGTAGCTGAGCATCTTTGCACCAGTGAAAGTACTATTCATC
GATTATTTCAGTCTCATTTTGGTGAAAGTTTTAGCCAATATTTGAAAAAACTGAGACTCAATCACGCCGCTAATTTACTT
ACTCACAGTCGTTTACCAATTGGAATTGTAGCAGAGCAAGTAGGGTATAGAAATCAAACGAATTTTAATCGCTTGTTTAA
GGATTATAAGCAACTGACGCCAAATCAATACAGGAAGAAGTTTAGTAGCCTTTAG

Upstream 100 bases:

>100_bases
ATCTACTTTTAATACTATTCCATCAAGCCCTACTTTTTTATGAAATAAACAGTACTATTAAGGCATGTTTTAGCATTATT
TAGTGAATGGGTACCAATAA

Downstream 100 bases:

>100_bases
GTTTTATATGAGAGGTAATAAAAAAGGCCGACAAAATGCCAGCCTTTTAAATGGTTTACTGTAGCGATTACAGTTTGTCA
GTTAGCTCGATAGCTTGACC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MKANLERVPIRIGSSWRYKKIDGVEKNCHWHFHNEYELVLFRKNNAKGMVGHFERVIEKNTLWLIPPKMPHAIELLEEKE
LQCESHIIWLPKEWVENMIFSCTELRRMGELFKRSSNGLCFSTSTAEKVYQLIEKLFKDSILDDLGYLIQILGCLCSDKE
TRPLQLFSKQEASDKEGKEKIDLVCQYIDDNYQNSITLLNVAEHLCTSESTIHRLFQSHFGESFSQYLKKLRLNHAANLL
THSRLPIGIVAEQVGYRNQTNFNRLFKDYKQLTPNQYRKKFSSL

Sequences:

>Translated_284_residues
MKANLERVPIRIGSSWRYKKIDGVEKNCHWHFHNEYELVLFRKNNAKGMVGHFERVIEKNTLWLIPPKMPHAIELLEEKE
LQCESHIIWLPKEWVENMIFSCTELRRMGELFKRSSNGLCFSTSTAEKVYQLIEKLFKDSILDDLGYLIQILGCLCSDKE
TRPLQLFSKQEASDKEGKEKIDLVCQYIDDNYQNSITLLNVAEHLCTSESTIHRLFQSHFGESFSQYLKKLRLNHAANLL
THSRLPIGIVAEQVGYRNQTNFNRLFKDYKQLTPNQYRKKFSSL
>Mature_284_residues
MKANLERVPIRIGSSWRYKKIDGVEKNCHWHFHNEYELVLFRKNNAKGMVGHFERVIEKNTLWLIPPKMPHAIELLEEKE
LQCESHIIWLPKEWVENMIFSCTELRRMGELFKRSSNGLCFSTSTAEKVYQLIEKLFKDSILDDLGYLIQILGCLCSDKE
TRPLQLFSKQEASDKEGKEKIDLVCQYIDDNYQNSITLLNVAEHLCTSESTIHRLFQSHFGESFSQYLKKLRLNHAANLL
THSRLPIGIVAEQVGYRNQTNFNRLFKDYKQLTPNQYRKKFSSL

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=100, Percent_Identity=33, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33406; Mature: 33406

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKANLERVPIRIGSSWRYKKIDGVEKNCHWHFHNEYELVLFRKNNAKGMVGHFERVIEKN
CCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHCC
TLWLIPPKMPHAIELLEEKELQCESHIIWLPKEWVENMIFSCTELRRMGELFKRSSNGLC
CEEEECCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FSTSTAEKVYQLIEKLFKDSILDDLGYLIQILGCLCSDKETRPLQLFSKQEASDKEGKEK
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
IDLVCQYIDDNYQNSITLLNVAEHLCTSESTIHRLFQSHFGESFSQYLKKLRLNHAANLL
HHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THSRLPIGIVAEQVGYRNQTNFNRLFKDYKQLTPNQYRKKFSSL
HHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MKANLERVPIRIGSSWRYKKIDGVEKNCHWHFHNEYELVLFRKNNAKGMVGHFERVIEKN
CCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHCC
TLWLIPPKMPHAIELLEEKELQCESHIIWLPKEWVENMIFSCTELRRMGELFKRSSNGLC
CEEEECCCCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FSTSTAEKVYQLIEKLFKDSILDDLGYLIQILGCLCSDKETRPLQLFSKQEASDKEGKEK
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
IDLVCQYIDDNYQNSITLLNVAEHLCTSESTIHRLFQSHFGESFSQYLKKLRLNHAANLL
HHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THSRLPIGIVAEQVGYRNQTNFNRLFKDYKQLTPNQYRKKFSSL
HHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]