Click here to switch to the map view.

The map label for this gene is clpS [H]

Identifier: 59712373

GI number: 59712373

Start: 1993105

End: 1993425

Strand: Reverse

Name: clpS [H]

Synonym: VF_1766

Alternate gene names: 59712373

Gene position: 1993425-1993105 (Counterclockwise)

Preceding gene: 59712376

Following gene: 59712372

Centisome position: 68.8

GC content: 37.38

Gene sequence:

>321_bases
ATGAGTAAACTATATGAATGGATTTCTCCTGATTCAGATGTTTTGGAGCAAGAGAAAACAGAGTTAAGACCGCCATCAAT
GTATAAAGTGGTTTTAAATAATGACGATTACACTCCAATGGAGTTTGTTGTTGAAGTTTTAGATAAATTTTTTTCCATGG
ATTTGGAAAAAGCAACACAATTAATGCTAACAGTGCATTATGAAGGGAAAGCAGTATGTGGGACGTTCACTGCTGAAGTT
GCTGAAACTAAAGTTGCGCAAGTGAATACTTACTCGCGTGATAATGAGCACCCACTGCTGTGTACAATGGAGCAAGCGTA
A

Upstream 100 bases:

>100_bases
AGTATCTTTTGTTTGATGTAATCTCTCGTCTAGATTAGTCTGAGTATTAAGGGGATACCTTGAAGTATCAGATTATTTTT
TTACTAATTTAGTTGTCGAC

Downstream 100 bases:

>100_bases
GTTTGTTCGTTACACCATAAATTGGTGTTTTGGGAGGTTCCTATGCTAAACAAAGAATTAGAAGCGAGTTTGAACACAGC
GTTTGCTCGTGCGCGAGAAA

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSKLYEWISPDSDVLEQEKTELRPPSMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGKAVCGTFTAEV
AETKVAQVNTYSRDNEHPLLCTMEQA

Sequences:

>Translated_106_residues
MSKLYEWISPDSDVLEQEKTELRPPSMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGKAVCGTFTAEV
AETKVAQVNTYSRDNEHPLLCTMEQA
>Mature_105_residues
SKLYEWISPDSDVLEQEKTELRPPSMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGKAVCGTFTAEVA
ETKVAQVNTYSRDNEHPLLCTMEQA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=106, Percent_Identity=66.9811320754717, Blast_Score=157, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 12204; Mature: 12073

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLYEWISPDSDVLEQEKTELRPPSMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQ
CCCCHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHE
LMLTVHYEGKAVCGTFTAEVAETKVAQVNTYSRDNEHPLLCTMEQA
EEEEEEECCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
SKLYEWISPDSDVLEQEKTELRPPSMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQ
CCCHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHE
LMLTVHYEGKAVCGTFTAEVAETKVAQVNTYSRDNEHPLLCTMEQA
EEEEEEECCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA