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The map label for this gene is yceD [H]

Identifier: 59712352

GI number: 59712352

Start: 1967505

End: 1968026

Strand: Reverse

Name: yceD [H]

Synonym: VF_1745

Alternate gene names: 59712352

Gene position: 1968026-1967505 (Counterclockwise)

Preceding gene: 59712354

Following gene: 59712351

Centisome position: 67.92

GC content: 38.89

Gene sequence:

>522_bases
ATGCAAAAGGTAAAATTACCACGAACAGTTGATGCTGCTCGAACTGCTCAAAAAAGAATGGACTACGATGGAATCATCCA
GTCTAGTATTTTAAAGCGTTTAGCTGAATCTACTGTAGATGTGAAAAGTGATGCTGAAGTCACTTTGTCATTTAAAGTTG
ACGAACAACGACTAGCCGTTATCTCTGGTAAAGCTGACGTCGATGTGTTGTTGGAATGTCAACGCTGTAATGAAAATTTC
GAACATCATCTAAGCGTATCATTTACCTACACGCCTTTTTTAAGCGAAGAGAAGGCAGCTTTAGTTCCTGAGGACTATGA
GCTTGTAGATTTAAATGAGTTTGGTGAAGTCGATCTCGTTGAGCTGGTAACTGACGAGTTTATTCTAGCGTTGCCGCAAG
TCGCTATGCATGACATTGAAGATTGTCAGGTCAAATCTAACAATTTGGTATTTGGCGAAATTCCTGAAGAGGAAGAGAAA
CCGAATCCGTTTGATGTTTTAAAATCTTTAAAACAACAGTAA

Upstream 100 bases:

>100_bases
TTAGCAACTCTGCTGAAATAGCAACTGGGAAGAAAAAAAGCATAAATTTGTGCCATTTTTCTTTGACTCGAAGGCTTTAG
AAAGATAAGATGCGCGCCCT

Downstream 100 bases:

>100_bases
TTGAGGAGTAGGGTCCATGGCCGTACAAAAGAGCAAGAAATCACGTTCAATGCGTGGCATGCGTCGTTCACACGATGCAC
TAACTACAAGTGCAGTATCT

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQKVKLPRTVDAARTAQKRMDYDGIIQSSILKRLAESTVDVKSDAEVTLSFKVDEQRLAVISGKADVDVLLECQRCNENF
EHHLSVSFTYTPFLSEEKAALVPEDYELVDLNEFGEVDLVELVTDEFILALPQVAMHDIEDCQVKSNNLVFGEIPEEEEK
PNPFDVLKSLKQQ

Sequences:

>Translated_173_residues
MQKVKLPRTVDAARTAQKRMDYDGIIQSSILKRLAESTVDVKSDAEVTLSFKVDEQRLAVISGKADVDVLLECQRCNENF
EHHLSVSFTYTPFLSEEKAALVPEDYELVDLNEFGEVDLVELVTDEFILALPQVAMHDIEDCQVKSNNLVFGEIPEEEEK
PNPFDVLKSLKQQ
>Mature_173_residues
MQKVKLPRTVDAARTAQKRMDYDGIIQSSILKRLAESTVDVKSDAEVTLSFKVDEQRLAVISGKADVDVLLECQRCNENF
EHHLSVSFTYTPFLSEEKAALVPEDYELVDLNEFGEVDLVELVTDEFILALPQVAMHDIEDCQVKSNNLVFGEIPEEEEK
PNPFDVLKSLKQQ

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=173, Percent_Identity=54.3352601156069, Blast_Score=201, Evalue=3e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19602; Mature: 19602

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKLPRTVDAARTAQKRMDYDGIIQSSILKRLAESTVDVKSDAEVTLSFKVDEQRLAV
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEE
ISGKADVDVLLECQRCNENFEHHLSVSFTYTPFLSEEKAALVPEDYELVDLNEFGEVDLV
EECCCCHHHHEEEHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHH
ELVTDEFILALPQVAMHDIEDCQVKSNNLVFGEIPEEEEKPNPFDVLKSLKQQ
HHHHHHHHHHHHHHHHHCCHHCEECCCCEEECCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MQKVKLPRTVDAARTAQKRMDYDGIIQSSILKRLAESTVDVKSDAEVTLSFKVDEQRLAV
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEE
ISGKADVDVLLECQRCNENFEHHLSVSFTYTPFLSEEKAALVPEDYELVDLNEFGEVDLV
EECCCCHHHHEEEHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHH
ELVTDEFILALPQVAMHDIEDCQVKSNNLVFGEIPEEEEKPNPFDVLKSLKQQ
HHHHHHHHHHHHHHHHHCCHHCEECCCCEEECCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]