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The map label for this gene is 59712291

Identifier: 59712291

GI number: 59712291

Start: 1896292

End: 1896855

Strand: Direct

Name: 59712291

Synonym: VF_1684

Alternate gene names: NA

Gene position: 1896292-1896855 (Clockwise)

Preceding gene: 59712289

Following gene: 172087719

Centisome position: 65.44

GC content: 38.3

Gene sequence:

>564_bases
TTGTTTAAATTATTACTTCCCATTCTGATTGGGCTTGGTATTGCTCAATTTAGTATGGTATCGGATATATTGGTATGGGA
TCGCTATCTGATAGAACATGGCGAGCTTTGGCGTATCGTAACAGGGAACTTTACCCATACGAATCTAGCACATTTAATAA
TGAATGCTGCTGCACTCGTCCTTTTTAGTTATATTTTTAAAGAGTTACTTACCCTTAAAAAATTATCGATTTTACTGTTT
TCTATCAGTTTACTAACTGGACTAGCACTACTCTTTACGCCAATACAAGCTTATGTTGGACTCTCAGGCGTATTACACGG
GCTGTTTGTTTGGGCTGCCATCGAAGACATAAAAAATAAACGCCAAACAGGATGGTTATTGCTGCTAGGTGTAATTACTA
AAATCAGTTGGGAGCACTATTTTGGAGCCAGTGCATCGACCATCTCATTAATAAATGCAAAAGTAGCGACAGAGGCACAT
TTATTTGGAGCAATCGCAGGCGGACTACTCCAAATTCCAACTCTATTTCTCAAAACTAATAAAGCTTCTGACGGCCTAAA
ATAG

Upstream 100 bases:

>100_bases
TAATTCAATATCCGTGGTAATGGGTGTGATCCACTCACATATACAGGCTTTTTTTGTTTTTAAACATTGAAGACAAAATC
GAATCACAAGGAACCTTTAC

Downstream 100 bases:

>100_bases
AGTGAGATAACGTTGTACCATCAACTAATTCTAATTCACCGCCCATTGGAACACCATGTGCTATTCGACTAGCTGGTACT
TGGTGCTCTTGGCAAAGCTC

Product: rhomboid family integral membrane protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid Protein; Rhomboid Family Membrane Protein; Rhomboid Family Peptidase; Rhomboid-Like Protein; Peptidase; Rhomboid Family Integral Membrane Protein

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MFKLLLPILIGLGIAQFSMVSDILVWDRYLIEHGELWRIVTGNFTHTNLAHLIMNAAALVLFSYIFKELLTLKKLSILLF
SISLLTGLALLFTPIQAYVGLSGVLHGLFVWAAIEDIKNKRQTGWLLLLGVITKISWEHYFGASASTISLINAKVATEAH
LFGAIAGGLLQIPTLFLKTNKASDGLK

Sequences:

>Translated_187_residues
MFKLLLPILIGLGIAQFSMVSDILVWDRYLIEHGELWRIVTGNFTHTNLAHLIMNAAALVLFSYIFKELLTLKKLSILLF
SISLLTGLALLFTPIQAYVGLSGVLHGLFVWAAIEDIKNKRQTGWLLLLGVITKISWEHYFGASASTISLINAKVATEAH
LFGAIAGGLLQIPTLFLKTNKASDGLK
>Mature_187_residues
MFKLLLPILIGLGIAQFSMVSDILVWDRYLIEHGELWRIVTGNFTHTNLAHLIMNAAALVLFSYIFKELLTLKKLSILLF
SISLLTGLALLFTPIQAYVGLSGVLHGLFVWAAIEDIKNKRQTGWLLLLGVITKISWEHYFGASASTISLINAKVATEAH
LFGAIAGGLLQIPTLFLKTNKASDGLK

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20591; Mature: 20591

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLLLPILIGLGIAQFSMVSDILVWDRYLIEHGELWRIVTGNFTHTNLAHLIMNAAALV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
LFSYIFKELLTLKKLSILLFSISLLTGLALLFTPIQAYVGLSGVLHGLFVWAAIEDIKNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RQTGWLLLLGVITKISWEHYFGASASTISLINAKVATEAHLFGAIAGGLLQIPTLFLKTN
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KASDGLK
CCCCCCC
>Mature Secondary Structure
MFKLLLPILIGLGIAQFSMVSDILVWDRYLIEHGELWRIVTGNFTHTNLAHLIMNAAALV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
LFSYIFKELLTLKKLSILLFSISLLTGLALLFTPIQAYVGLSGVLHGLFVWAAIEDIKNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RQTGWLLLLGVITKISWEHYFGASASTISLINAKVATEAHLFGAIAGGLLQIPTLFLKTN
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KASDGLK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA