Click here to switch to the map view.

The map label for this gene is yqhC [H]

Identifier: 59712284

GI number: 59712284

Start: 1887879

End: 1888763

Strand: Reverse

Name: yqhC [H]

Synonym: VF_1677

Alternate gene names: 59712284

Gene position: 1888763-1887879 (Counterclockwise)

Preceding gene: 59712286

Following gene: 59712282

Centisome position: 65.19

GC content: 39.1

Gene sequence:

>885_bases
ATGAAGTCTTTGGGCGAATTGATGCAAAGTTATGCGGATCATTGTGGATTTAATGATCTTGAAGGTATTAAAGAAACCGC
TATTCCTGGCGTGTGGTTTTATCGCAGTAGTAAAGGAAATCAACGTCAGCCTTTTGTTTATCAGTCAGGGATTATTGTTC
TTGGTAAAGGTCATAAGAATATTTATATAGGTAATCAGCCAGTTCATTATGGCCCTGATGATTATTTAGTGGTGGGCGTG
CCGATGCCATTAGAGTGCGAAGCATTCCCAGAAAATGGAGAGCCGTTGTTAGGTTTAAGTATTGATGTGGATTCCGCTTT
GTTACACCGTTTAGTAAATGAACTAGAAGAAGCAAAGTTTCAACCTTGTATACAAACCTCTTCAGATGGCTTTGGATTAA
CATCCGTAAAAATGGCGAATGATATGTTGGAGAGCTGTAAGCGATTAATGGCAGCATTACATACAGATCTAGATACAAAA
ATGCTAGGAGAGGCATTATTAACTGAGATTGTGTATCGAGTGCTGACTGGGCCAGAAGGTCACGTATTATTTAATTTAGC
GCATCATGATAGCCAGTATGCTCGTGTTGCTAAAGCGATGAATAAGATGCATCAATCGTATGCAAATAGCTTAACTGTGC
AAAATTTAGCGGAAGAAGCCAACATGAGTGTTTCTGCTTTTCACTCTGCATTTAGGAAAATCACGCTAGAGTCGCCATTG
CAGTATTTAAAAAAAGTACGTTTAAATAAAGCAAAAGAGTTGATTCAATTAGAAGGTAAACGAGTGAATGACGCTGCTCA
TTTAGTTGGATATACCAGCACTTCTCAATTTAGCCGTGAGTTTAAGCGCCATTTTAATGTGACGCCTAAGGGCTGTTTGG
CTTAG

Upstream 100 bases:

>100_bases
AAGGCGAATTCCTGCTTTTTTATTGCCTATTTCTACAATTAAGCGTATTTTTTTAAATAGAATTGAATAGATGTGATCTT
AATCAGATAAAGGATAATGA

Downstream 100 bases:

>100_bases
TGTGAATATTTAAGGGCAAGACAATAAAAATTAAGCGGTCCTTTGATGTATTCGGAAATATCTAATTCGTGCGATGGGTT
ACAGTGTAAAGCGAGAGCAA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKSLGELMQSYADHCGFNDLEGIKETAIPGVWFYRSSKGNQRQPFVYQSGIIVLGKGHKNIYIGNQPVHYGPDDYLVVGV
PMPLECEAFPENGEPLLGLSIDVDSALLHRLVNELEEAKFQPCIQTSSDGFGLTSVKMANDMLESCKRLMAALHTDLDTK
MLGEALLTEIVYRVLTGPEGHVLFNLAHHDSQYARVAKAMNKMHQSYANSLTVQNLAEEANMSVSAFHSAFRKITLESPL
QYLKKVRLNKAKELIQLEGKRVNDAAHLVGYTSTSQFSREFKRHFNVTPKGCLA

Sequences:

>Translated_294_residues
MKSLGELMQSYADHCGFNDLEGIKETAIPGVWFYRSSKGNQRQPFVYQSGIIVLGKGHKNIYIGNQPVHYGPDDYLVVGV
PMPLECEAFPENGEPLLGLSIDVDSALLHRLVNELEEAKFQPCIQTSSDGFGLTSVKMANDMLESCKRLMAALHTDLDTK
MLGEALLTEIVYRVLTGPEGHVLFNLAHHDSQYARVAKAMNKMHQSYANSLTVQNLAEEANMSVSAFHSAFRKITLESPL
QYLKKVRLNKAKELIQLEGKRVNDAAHLVGYTSTSQFSREFKRHFNVTPKGCLA
>Mature_294_residues
MKSLGELMQSYADHCGFNDLEGIKETAIPGVWFYRSSKGNQRQPFVYQSGIIVLGKGHKNIYIGNQPVHYGPDDYLVVGV
PMPLECEAFPENGEPLLGLSIDVDSALLHRLVNELEEAKFQPCIQTSSDGFGLTSVKMANDMLESCKRLMAALHTDLDTK
MLGEALLTEIVYRVLTGPEGHVLFNLAHHDSQYARVAKAMNKMHQSYANSLTVQNLAEEANMSVSAFHSAFRKITLESPL
QYLKKVRLNKAKELIQLEGKRVNDAAHLVGYTSTSQFSREFKRHFNVTPKGCLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=273, Percent_Identity=39.5604395604396, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32777; Mature: 32777

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLGELMQSYADHCGFNDLEGIKETAIPGVWFYRSSKGNQRQPFVYQSGIIVLGKGHKN
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCEEEEECCCCE
IYIGNQPVHYGPDDYLVVGVPMPLECEAFPENGEPLLGLSIDVDSALLHRLVNELEEAKF
EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHC
QPCIQTSSDGFGLTSVKMANDMLESCKRLMAALHTDLDTKMLGEALLTEIVYRVLTGPEG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
HVLFNLAHHDSQYARVAKAMNKMHQSYANSLTVQNLAEEANMSVSAFHSAFRKITLESPL
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QYLKKVRLNKAKELIQLEGKRVNDAAHLVGYTSTSQFSREFKRHFNVTPKGCLA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKSLGELMQSYADHCGFNDLEGIKETAIPGVWFYRSSKGNQRQPFVYQSGIIVLGKGHKN
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCEEEEECCCCE
IYIGNQPVHYGPDDYLVVGVPMPLECEAFPENGEPLLGLSIDVDSALLHRLVNELEEAKF
EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHC
QPCIQTSSDGFGLTSVKMANDMLESCKRLMAALHTDLDTKMLGEALLTEIVYRVLTGPEG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
HVLFNLAHHDSQYARVAKAMNKMHQSYANSLTVQNLAEEANMSVSAFHSAFRKITLESPL
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QYLKKVRLNKAKELIQLEGKRVNDAAHLVGYTSTSQFSREFKRHFNVTPKGCLA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]