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The map label for this gene is yuxH [H]

Identifier: 59712210

GI number: 59712210

Start: 1798643

End: 1799845

Strand: Direct

Name: yuxH [H]

Synonym: VF_1603

Alternate gene names: 59712210

Gene position: 1798643-1799845 (Clockwise)

Preceding gene: 59712209

Following gene: 59712211

Centisome position: 62.07

GC content: 35.66

Gene sequence:

>1203_bases
ATGTACACATATGTTGCTCGTCAACCAATCTTAGACCTAAGTAAAAATACGATTGGTTACGAATTATTATTTCGAGACGG
TCCAAAAAACACTTTTCCACTTGTTGAAGCAGAAGAAGCAACGAGCCGACTTTTATCCGATCATTTTTTAAGCTCATACT
GCAATGCAACAAATGATAAATTAGGCTTTGTTAATTTCCCTCAACAAAGCTTATTAAATCTAGTTCCTACGCTTTTTAAT
CCAGATAACTTAGTAGTTGAAATACTAGAAGACTGCATTCCAAGCCCTGAATTATTAGTAGCAATTAAACGTCTTGCCAA
GCTAGGTTACAAACTTGCTCTTGATGATTTTGAGCCAAATCCAGATTGGACTCCTTTTCTACCTTACATTGATATCATCA
AGTTTGATATGCGTACAATGCCAATTCTAAAGGCAAAGCTATTCATTCGTCATTGTGAGAAATACAATATTAAGTTTTTA
GCTGAGAAAGTAGAAACTTACGAAGAATTTGAGCAGGCAAAAGAAGCTGGCTTTACTTATTTCCAAGGCTATTTTTTCAG
TAAACCTGAAATGCTTCAGCAACGAGCAATTCAACCAAATCAACTTGCGATTATTCAGTTATACCAAGAGATCTCTGCAC
CTAGTGTCGATTTCAATACCGTAGAAAAATACATCACTCAAGATGTTTCACTTTCTTATAAACTGCTACGATTTGTTAAC
TCATCTTCTATTATTGACAAGCCAATCACCTCTTTTAAGCAAGCATTAGTCTATTTGGGTGAAACTAAGCTTCGTCAATT
TGTATCATTGGTAGCAGTTGCTCATGCAACTCAACACAAACCACAATCTCTATACACGTTATCAATCCACCGTGCTAGAT
TGTGTGAGTTAATCGTAACTAAAACGGATATTGAATTAGAACCAAGCCAAGCTTTTTTAGTTGGACTGTTTTCTTTACTT
GAGCCTTTACTAGATCAACCGCTTGAAACACTGATTCAGCATTTGCCTATTTCTATTGAAATAAAACAAGCGCTCACTGA
ACGTAAAGGATTATTAGGAAAGCTGATATTAGCTATCGAGAGCTATGAAAAAGCAGATTGGAGCGTCGTAGCCGAATGTT
GTCGATCTCTAAATATTACAGAAAAAGAATTTACCGCTTGTTATAAAGAATCTGCCAAATGGGTAGATGAGATAGCAAAA
TAG

Upstream 100 bases:

>100_bases
TTTGCCTTTAAATGTCTCAAACAAGAAACATAGTTTTTTTACTGTAAAGCGTTTATTATGAGCGCAGTTCCGATTCAACA
CGCTGTAGAGAAAAGTTGTT

Downstream 100 bases:

>100_bases
AGACGTCTGAATATGTCAAAATCAAATCATTGCCCTTGCGGTACAAAAAAAAATTATTCTGTTTGTTGTGAGCCTATTCA
TAACAATCATTCACTAGCGA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MYTYVARQPILDLSKNTIGYELLFRDGPKNTFPLVEAEEATSRLLSDHFLSSYCNATNDKLGFVNFPQQSLLNLVPTLFN
PDNLVVEILEDCIPSPELLVAIKRLAKLGYKLALDDFEPNPDWTPFLPYIDIIKFDMRTMPILKAKLFIRHCEKYNIKFL
AEKVETYEEFEQAKEAGFTYFQGYFFSKPEMLQQRAIQPNQLAIIQLYQEISAPSVDFNTVEKYITQDVSLSYKLLRFVN
SSSIIDKPITSFKQALVYLGETKLRQFVSLVAVAHATQHKPQSLYTLSIHRARLCELIVTKTDIELEPSQAFLVGLFSLL
EPLLDQPLETLIQHLPISIEIKQALTERKGLLGKLILAIESYEKADWSVVAECCRSLNITEKEFTACYKESAKWVDEIAK

Sequences:

>Translated_400_residues
MYTYVARQPILDLSKNTIGYELLFRDGPKNTFPLVEAEEATSRLLSDHFLSSYCNATNDKLGFVNFPQQSLLNLVPTLFN
PDNLVVEILEDCIPSPELLVAIKRLAKLGYKLALDDFEPNPDWTPFLPYIDIIKFDMRTMPILKAKLFIRHCEKYNIKFL
AEKVETYEEFEQAKEAGFTYFQGYFFSKPEMLQQRAIQPNQLAIIQLYQEISAPSVDFNTVEKYITQDVSLSYKLLRFVN
SSSIIDKPITSFKQALVYLGETKLRQFVSLVAVAHATQHKPQSLYTLSIHRARLCELIVTKTDIELEPSQAFLVGLFSLL
EPLLDQPLETLIQHLPISIEIKQALTERKGLLGKLILAIESYEKADWSVVAECCRSLNITEKEFTACYKESAKWVDEIAK
>Mature_400_residues
MYTYVARQPILDLSKNTIGYELLFRDGPKNTFPLVEAEEATSRLLSDHFLSSYCNATNDKLGFVNFPQQSLLNLVPTLFN
PDNLVVEILEDCIPSPELLVAIKRLAKLGYKLALDDFEPNPDWTPFLPYIDIIKFDMRTMPILKAKLFIRHCEKYNIKFL
AEKVETYEEFEQAKEAGFTYFQGYFFSKPEMLQQRAIQPNQLAIIQLYQEISAPSVDFNTVEKYITQDVSLSYKLLRFVN
SSSIIDKPITSFKQALVYLGETKLRQFVSLVAVAHATQHKPQSLYTLSIHRARLCELIVTKTDIELEPSQAFLVGLFSLL
EPLLDQPLETLIQHLPISIEIKQALTERKGLLGKLILAIESYEKADWSVVAECCRSLNITEKEFTACYKESAKWVDEIAK

Specific function: Unknown

COG id: COG3434

COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014408
- InterPro:   IPR001633
- InterPro:   IPR013976 [H]

Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 45861; Mature: 45861

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTYVARQPILDLSKNTIGYELLFRDGPKNTFPLVEAEEATSRLLSDHFLSSYCNATNDK
CCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCC
LGFVNFPQQSLLNLVPTLFNPDNLVVEILEDCIPSPELLVAIKRLAKLGYKLALDDFEPN
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCC
PDWTPFLPYIDIIKFDMRTMPILKAKLFIRHCEKYNIKFLAEKVETYEEFEQAKEAGFTY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH
FQGYFFSKPEMLQQRAIQPNQLAIIQLYQEISAPSVDFNTVEKYITQDVSLSYKLLRFVN
HHCEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
SSSIIDKPITSFKQALVYLGETKLRQFVSLVAVAHATQHKPQSLYTLSIHRARLCELIVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHH
KTDIELEPSQAFLVGLFSLLEPLLDQPLETLIQHLPISIEIKQALTERKGLLGKLILAIE
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH
SYEKADWSVVAECCRSLNITEKEFTACYKESAKWVDEIAK
HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYTYVARQPILDLSKNTIGYELLFRDGPKNTFPLVEAEEATSRLLSDHFLSSYCNATNDK
CCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCC
LGFVNFPQQSLLNLVPTLFNPDNLVVEILEDCIPSPELLVAIKRLAKLGYKLALDDFEPN
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCC
PDWTPFLPYIDIIKFDMRTMPILKAKLFIRHCEKYNIKFLAEKVETYEEFEQAKEAGFTY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH
FQGYFFSKPEMLQQRAIQPNQLAIIQLYQEISAPSVDFNTVEKYITQDVSLSYKLLRFVN
HHCEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
SSSIIDKPITSFKQALVYLGETKLRQFVSLVAVAHATQHKPQSLYTLSIHRARLCELIVT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHH
KTDIELEPSQAFLVGLFSLLEPLLDQPLETLIQHLPISIEIKQALTERKGLLGKLILAIE
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH
SYEKADWSVVAECCRSLNITEKEFTACYKESAKWVDEIAK
HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507523; 9274030; 9384377; 1943994 [H]