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The map label for this gene is ybeQ [H]

Identifier: 59712147

GI number: 59712147

Start: 1723607

End: 1724302

Strand: Direct

Name: ybeQ [H]

Synonym: VF_1540

Alternate gene names: 59712147

Gene position: 1723607-1724302 (Clockwise)

Preceding gene: 59712146

Following gene: 59712151

Centisome position: 59.49

GC content: 33.76

Gene sequence:

>696_bases
ATGAAAATACTTTTAAAATCGTTAGTTATATCTGCTTCATTATGCTCACCTTTTGTTCTAGCTAACAGTGAAGCTCATAG
TGATTATCTAAAAGGCACGGCTTATTTAAATCAAGATAACTATAAAGAAGCAATTACTTGGTTAACCAGTGCTGCTAATA
ATGGTTCTATTGAAGCACAAAACAAAATTGGAACTATTTATGCGAAAGGGATCGGTACTGAAGCAAACACACAACTTGCT
ACCCAGTATTTTTTGAAAGCCGCAGCAAACCAAAGTTCTATGGCTTACTATAACCTTGGTAAAATCTACGAATCAGAAGA
AAAATATTCAACATCTATTGATTGGTATAACAAAGCAATTGAAGAAAATAACAGTAATGCAATGAATAACCTTGCTGACT
TATATCTTCATGGCAAAGGGCTTGTTCAAAATACTCACCAAGCAGAATTACTTTATATTCAAGCTGCTGAATTAGGTAAT
GCTACAGCGATGCGTAATCTTGGTTTCTTATACACTAACAATAAAGAAGTTAAACAAGACATGAGCAAAGCGTATTTTTG
GTTTAACCTTGCTGCTGAAAAAGACTTCCCAGATGCAGATAAGTACCGTGACTATACAGGGAAAAAGCTAAGTAAAAGTA
AACGCATTAAAGTTCAAAATGAAGCACTTGAATGGTTAGAACAGCATAATAGTTAA

Upstream 100 bases:

>100_bases
CTCTCTTTTCTCTCTTGAGTAATTAACTTATCGCTCGCCGTACTGTGCTTTTATTGCTAACATACAAACAATAATATTTT
GTTAACTCGTTGGTTATGTA

Downstream 100 bases:

>100_bases
TTTATAACCATAAAATAAGCAGACAAACAAGGCCACATCAGTAATTCACTGATGCGGCCTTTTTAATTATCGTTTAGCGA
ACTTATTTTCTATTACTTTA

Product: suppressor/enhancer of lin-12

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKILLKSLVISASLCSPFVLANSEAHSDYLKGTAYLNQDNYKEAITWLTSAANNGSIEAQNKIGTIYAKGIGTEANTQLA
TQYFLKAAANQSSMAYYNLGKIYESEEKYSTSIDWYNKAIEENNSNAMNNLADLYLHGKGLVQNTHQAELLYIQAAELGN
ATAMRNLGFLYTNNKEVKQDMSKAYFWFNLAAEKDFPDADKYRDYTGKKLSKSKRIKVQNEALEWLEQHNS

Sequences:

>Translated_231_residues
MKILLKSLVISASLCSPFVLANSEAHSDYLKGTAYLNQDNYKEAITWLTSAANNGSIEAQNKIGTIYAKGIGTEANTQLA
TQYFLKAAANQSSMAYYNLGKIYESEEKYSTSIDWYNKAIEENNSNAMNNLADLYLHGKGLVQNTHQAELLYIQAAELGN
ATAMRNLGFLYTNNKEVKQDMSKAYFWFNLAAEKDFPDADKYRDYTGKKLSKSKRIKVQNEALEWLEQHNS
>Mature_231_residues
MKILLKSLVISASLCSPFVLANSEAHSDYLKGTAYLNQDNYKEAITWLTSAANNGSIEAQNKIGTIYAKGIGTEANTQLA
TQYFLKAAANQSSMAYYNLGKIYESEEKYSTSIDWYNKAIEENNSNAMNNLADLYLHGKGLVQNTHQAELLYIQAAELGN
ATAMRNLGFLYTNNKEVKQDMSKAYFWFNLAAEKDFPDADKYRDYTGKKLSKSKRIKVQNEALEWLEQHNS

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=177, Percent_Identity=29.9435028248588, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081769, Length=158, Percent_Identity=34.1772151898734, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 26022; Mature: 26022

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLKSLVISASLCSPFVLANSEAHSDYLKGTAYLNQDNYKEAITWLTSAANNGSIEAQ
CHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCEEEC
NKIGTIYAKGIGTEANTQLATQYFLKAAANQSSMAYYNLGKIYESEEKYSTSIDWYNKAI
CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCHHHCCHHHHHHHHH
EENNSNAMNNLADLYLHGKGLVQNTHQAELLYIQAAELGNATAMRNLGFLYTNNKEVKQD
HCCCCHHHHHHHHHHCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCEEEECCHHHHHH
MSKAYFWFNLAAEKDFPDADKYRDYTGKKLSKSKRIKVQNEALEWLEQHNS
HHHHEEEEEEECCCCCCCCHHHHCCCCCHHCCCCCEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MKILLKSLVISASLCSPFVLANSEAHSDYLKGTAYLNQDNYKEAITWLTSAANNGSIEAQ
CHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCEEEC
NKIGTIYAKGIGTEANTQLATQYFLKAAANQSSMAYYNLGKIYESEEKYSTSIDWYNKAI
CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCHHHCCHHHHHHHHH
EENNSNAMNNLADLYLHGKGLVQNTHQAELLYIQAAELGNATAMRNLGFLYTNNKEVKQD
HCCCCHHHHHHHHHHCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCEEEECCHHHHHH
MSKAYFWFNLAAEKDFPDADKYRDYTGKKLSKSKRIKVQNEALEWLEQHNS
HHHHEEEEEEECCCCCCCCHHHHCCCCCHHCCCCCEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]