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The map label for this gene is yccA [H]

Identifier: 59712143

GI number: 59712143

Start: 1718218

End: 1718880

Strand: Direct

Name: yccA [H]

Synonym: VF_1536

Alternate gene names: 59712143

Gene position: 1718218-1718880 (Clockwise)

Preceding gene: 59712142

Following gene: 59712145

Centisome position: 59.3

GC content: 39.97

Gene sequence:

>663_bases
ATGAATAATCAAATGTTCAGCCAAACTCATACACAAGAGTCGGCTCTACAAACTAACAAAGTATTACGTAATACTTATTT
CTTATTATCAATGACACTACTTTGGTCTGCGGTAGTTGCTGGTGTTTCAATGGCAATGAACCTACCTCGTCCAGGTATCA
TCATCATGCTTGTTGGTTTCTACGGCCTACTTTTCTTGACGGAAAAGAACCGTAACAACAACATGGGTCTTGTATTTACG
TTCCTATTTACAGGCTTCTTAGGCTACACCATTGGTCCAATCCTTAACATGTACATTGGTGCAGGTATGGGTGATGTGAT
CTTAACTGCACTTGGCGGTACTGCGCTTTCTTTCATGGCAGCATCTGCTTATGCACTAACAACTAAGCGTGACCTATCGT
TCCTTAACGGTGTGTTAATGGCTGGTTTTGTTGTTCTATTAATTGGTATGGTAGCAAACATCTTCCTACAAATGCCATTA
TTACACCTAGCAATGAGTGGTATGTTTATCCTGTTCTCAACAGGTGCAATCTTGCTAACAACGCAATCAATCATTCGTGG
TGGTGAAACAAACTACATCTCAGCAACGATTACGCTGTATGTTTCTATCTACAATATCTTCATCAGCCTACTAAGCATTC
TTGGTATCATGCGTGATGATTAA

Upstream 100 bases:

>100_bases
CAATTAATTCAAACCGAAAGTCAATTCTATCTTGATTTTTGGAACTATAAGCGCCATAACTGTCTATATAATTATGTCAG
TACATTCCAAGGGGAATACG

Downstream 100 bases:

>100_bases
TCGATAATATCGAATAAAAAAAATGCCAGTCAATCGACTGGCATTTTTGTATCTATGGTTTCTATTATTGTACCAATCAC
AGTAACTAGGTATTAATTCA

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNNQMFSQTHTQESALQTNKVLRNTYFLLSMTLLWSAVVAGVSMAMNLPRPGIIIMLVGFYGLLFLTEKNRNNNMGLVFT
FLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMAASAYALTTKRDLSFLNGVLMAGFVVLLIGMVANIFLQMPL
LHLAMSGMFILFSTGAILLTTQSIIRGGETNYISATITLYVSIYNIFISLLSILGIMRDD

Sequences:

>Translated_220_residues
MNNQMFSQTHTQESALQTNKVLRNTYFLLSMTLLWSAVVAGVSMAMNLPRPGIIIMLVGFYGLLFLTEKNRNNNMGLVFT
FLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMAASAYALTTKRDLSFLNGVLMAGFVVLLIGMVANIFLQMPL
LHLAMSGMFILFSTGAILLTTQSIIRGGETNYISATITLYVSIYNIFISLLSILGIMRDD
>Mature_220_residues
MNNQMFSQTHTQESALQTNKVLRNTYFLLSMTLLWSAVVAGVSMAMNLPRPGIIIMLVGFYGLLFLTEKNRNNNMGLVFT
FLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMAASAYALTTKRDLSFLNGVLMAGFVVLLIGMVANIFLQMPL
LHLAMSGMFILFSTGAILLTTQSIIRGGETNYISATITLYVSIYNIFISLLSILGIMRDD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=218, Percent_Identity=63.302752293578, Blast_Score=274, Evalue=4e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23991; Mature: 23991

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNQMFSQTHTQESALQTNKVLRNTYFLLSMTLLWSAVVAGVSMAMNLPRPGIIIMLVGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
YGLLFLTEKNRNNNMGLVFTFLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMA
HHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASAYALTTKRDLSFLNGVLMAGFVVLLIGMVANIFLQMPLLHLAMSGMFILFSTGAILLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEE
TQSIIRGGETNYISATITLYVSIYNIFISLLSILGIMRDD
HHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNQMFSQTHTQESALQTNKVLRNTYFLLSMTLLWSAVVAGVSMAMNLPRPGIIIMLVGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
YGLLFLTEKNRNNNMGLVFTFLFTGFLGYTIGPILNMYIGAGMGDVILTALGGTALSFMA
HHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASAYALTTKRDLSFLNGVLMAGFVVLLIGMVANIFLQMPLLHLAMSGMFILFSTGAILLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEE
TQSIIRGGETNYISATITLYVSIYNIFISLLSILGIMRDD
HHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]