| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59712127
Identifier: 59712127
GI number: 59712127
Start: 1698402
End: 1699553
Strand: Direct
Name: 59712127
Synonym: VF_1520
Alternate gene names: NA
Gene position: 1698402-1699553 (Clockwise)
Preceding gene: 172087715
Following gene: 59712133
Centisome position: 58.62
GC content: 38.63
Gene sequence:
>1152_bases ATGATTACGCATGTTGGCATTTTAGATCAAGACCCCGTACGTCTTATCACCCCCCTTTTAGACTTATCTGTTAAAGGGGA ACACATGGTATTTATCGGCGATGAAACTCAAAAAGAGATGTTTCATCGACTCGAGTCAATTCTAAAATATAAAGGGATCA GTTCTGATTTTTTTGAAATCCCAAATATTGTTGATACCCATGCAATCAAACAATCATTACAAGCACTTGCTGCTGAAATG AAACTTCACTTTAGTGATATCAAATTAAATGCGAGTTGTGGTCTTCGTCACCGTCTTCTTTCTGCCTATGAAGTGTTCCG TTCATATCATTGGCCAATCTTTGTTGTAGAGCCATACAGTGATAAATTATGCTGGTTATACCCAGATGGTCGCAAACAAA AACACGTTGCTGATAATATTCGCTTGAGTGATTATCTTGCTATTTTTGGGGCTCGTTGTGAGTTTTCAGAAACTGAATTA CCAGAAAGTATCGATAAGCGCTTAAGAGAACTATGCCAACGCTGGGCAAGCAACGCATTAGAGTTAGGCCCGGGCTTAGC AACATTAAACTACTTAGCAACCACCTGTCGTAAAGAACAACGTTTAGATGTTGAAGTAACAGAGAAACAACAGAGCTATA AAGAACTTAATATGCTACTAACTGACCTTGTAGAAACAGGGTTAGCTACCTATGAAAACGGCATATTAACATTCGATTGT GAAGAAGCTCGTCGTTTAGCTAATGGGGAATGGCTTGAAATATTGGTTCACAATACCGTTGTCGATATTCAACAATATTT ACCAACACTGCAAGACCACTCTTTAAATGTACAAGTGCATCGTGAGATTGGTGAAAAAGACGTTCGTAATGAACTTGATG TGGTTAGTATTGTAAATAACAAACTGCATATCATTGAATGTAAAACAAAAGGTATGCGTGATGATGGTGATGATACACTT TACAAATTAGAATCATTACGTGACTTACTTGGTGGGCTTCAAGCTCGTGCAATGTTAGTCAGTTTCCGTCCTTTACGTAA TAACGACATTATGCGCGCACAGGATTTAGGCTTAGCTATTATCGGCCCTGATGAATTAGGCGATCTTAAAAAACACCTTC TTAACTGGTTCTTAGCGGCCGGTGGTCATTAA
Upstream 100 bases:
>100_bases ATTGAATAGTCAAAATTATTCAAAACCATAAATATAACGAAAGATTACACATGCCTTCTTGCTTCCATTTATGTGTAATC GCCATTACAAGGATTATTAA
Downstream 100 bases:
>100_bases TATTTTCAATTAAGATCCTCTCTGATACTAAAAAGATCCTGCTGTGGGCCTTTTTTAATGCTTTTCAATTCATATAAAAA TGCCGCTGATTCACTATGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MITHVGILDQDPVRLITPLLDLSVKGEHMVFIGDETQKEMFHRLESILKYKGISSDFFEIPNIVDTHAIKQSLQALAAEM KLHFSDIKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPYSDKLCWLYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL PESIDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGILTFDC EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGEKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH
Sequences:
>Translated_383_residues MITHVGILDQDPVRLITPLLDLSVKGEHMVFIGDETQKEMFHRLESILKYKGISSDFFEIPNIVDTHAIKQSLQALAAEM KLHFSDIKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPYSDKLCWLYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL PESIDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGILTFDC EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGEKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH >Mature_383_residues MITHVGILDQDPVRLITPLLDLSVKGEHMVFIGDETQKEMFHRLESILKYKGISSDFFEIPNIVDTHAIKQSLQALAAEM KLHFSDIKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPYSDKLCWLYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL PESIDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGILTFDC EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGEKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43824; Mature: 43824
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITHVGILDQDPVRLITPLLDLSVKGEHMVFIGDETQKEMFHRLESILKYKGISSDFFEI CCEECCCCCCCHHHHHHHHHHCEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHC PNIVDTHAIKQSLQALAAEMKLHFSDIKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPYS CCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCC DKLCWLYPDGRKQKHVADNIRLSDYLAIFGARCEFSETELPESIDKRLRELCQRWASNAL CCEEEECCCCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH ELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGILTFDC HCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGEKDVRNELDVVSIVNN HHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEEHHHCCHHHHHHHHHHHEEECC KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAI CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCEEE IGPDELGDLKKHLLNWFLAAGGH ECCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MITHVGILDQDPVRLITPLLDLSVKGEHMVFIGDETQKEMFHRLESILKYKGISSDFFEI CCEECCCCCCCHHHHHHHHHHCEECCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHC PNIVDTHAIKQSLQALAAEMKLHFSDIKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPYS CCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCC DKLCWLYPDGRKQKHVADNIRLSDYLAIFGARCEFSETELPESIDKRLRELCQRWASNAL CCEEEECCCCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH ELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGILTFDC HCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGEKDVRNELDVVSIVNN HHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEEHHHCCHHHHHHHHHHHEEECC KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAI CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCEEE IGPDELGDLKKHLLNWFLAAGGH ECCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA