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The map label for this gene is nlpC [H]

Identifier: 59712018

GI number: 59712018

Start: 1562083

End: 1562622

Strand: Direct

Name: nlpC [H]

Synonym: VF_1411

Alternate gene names: 59712018

Gene position: 1562083-1562622 (Clockwise)

Preceding gene: 172087707

Following gene: 59712020

Centisome position: 53.91

GC content: 36.48

Gene sequence:

>540_bases
ATGTTAATTCCCGTGAAATTCATTCAAAATAGTTATCTGCATTTTTTATATAGGCTTGTTATGTTTCGTCACCTTTTCGC
TATATTTACTGTTGTTGGCTTATTGGGGTGCTCCTCAACTCCTCCAGTGGCAGAGTTATCAAAACAAGAGATCACCACTC
AACATCCACAGCTCTCATCATCAGATGCTTATCAAGATTATTTTTATCAATGGCAAGGAGTTCCGTATAAATACGGGGGT
ACTTCTAAGAATGGCGTTGATTGTTCTGCATTTACTCAAAACGCATTTGATGTTTTACATCGTTTATCGCTGCCAAGAAC
TACAGAGTATCAAGCAACTTCTGGCACTCAAATCGCATTAGCTAATGCTAAAAAAGGCGATTTAATCTTTTTCAAAACCA
GTGTAAAAGTAAGGCATGTTGGTGTTTATATTGGAAATAGAGAATTTATGCATGCATCTACATCCAAAGGCGTGATTATC
TCTAGCTTAGATAATCCTTATTGGAAAAAAGCATTCTGGCAAGTTCGAAGAGTGTTATAA

Upstream 100 bases:

>100_bases
AACAAAACTTTTGATTAACAATCAATCAGTTTATTTCACATAAAAGTCGAGATAAAAAATGAGAAAGTACTATAATTAGC
TTTCAATATTCTCTATTTTG

Downstream 100 bases:

>100_bases
ACAAAAAAGCTAAGTGAAATACCCCTACTTCACTTAGCTTCACGATCTTTCGTTCTTTATGATATGAATTACTTAAATGC
GCTATCAAATAAGTTTTTAA

Product: lipoprotein NlpC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MLIPVKFIQNSYLHFLYRLVMFRHLFAIFTVVGLLGCSSTPPVAELSKQEITTQHPQLSSSDAYQDYFYQWQGVPYKYGG
TSKNGVDCSAFTQNAFDVLHRLSLPRTTEYQATSGTQIALANAKKGDLIFFKTSVKVRHVGVYIGNREFMHASTSKGVII
SSLDNPYWKKAFWQVRRVL

Sequences:

>Translated_179_residues
MLIPVKFIQNSYLHFLYRLVMFRHLFAIFTVVGLLGCSSTPPVAELSKQEITTQHPQLSSSDAYQDYFYQWQGVPYKYGG
TSKNGVDCSAFTQNAFDVLHRLSLPRTTEYQATSGTQIALANAKKGDLIFFKTSVKVRHVGVYIGNREFMHASTSKGVII
SSLDNPYWKKAFWQVRRVL
>Mature_179_residues
MLIPVKFIQNSYLHFLYRLVMFRHLFAIFTVVGLLGCSSTPPVAELSKQEITTQHPQLSSSDAYQDYFYQWQGVPYKYGG
TSKNGVDCSAFTQNAFDVLHRLSLPRTTEYQATSGTQIALANAKKGDLIFFKTSVKVRHVGVYIGNREFMHASTSKGVII
SSLDNPYWKKAFWQVRRVL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=176, Percent_Identity=39.2045454545455, Blast_Score=129, Evalue=9e-32,
Organism=Escherichia coli, GI1788001, Length=148, Percent_Identity=45.2702702702703, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1787944, Length=120, Percent_Identity=35, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786421, Length=116, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 20370; Mature: 20370

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIPVKFIQNSYLHFLYRLVMFRHLFAIFTVVGLLGCSSTPPVAELSKQEITTQHPQLSS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
SDAYQDYFYQWQGVPYKYGGTSKNGVDCSAFTQNAFDVLHRLSLPRTTEYQATSGTQIAL
CCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
ANAKKGDLIFFKTSVKVRHVGVYIGNREFMHASTSKGVIISSLDNPYWKKAFWQVRRVL
ECCCCCCEEEEEECEEEEEEEEEECCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIPVKFIQNSYLHFLYRLVMFRHLFAIFTVVGLLGCSSTPPVAELSKQEITTQHPQLSS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
SDAYQDYFYQWQGVPYKYGGTSKNGVDCSAFTQNAFDVLHRLSLPRTTEYQATSGTQIAL
CCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
ANAKKGDLIFFKTSVKVRHVGVYIGNREFMHASTSKGVIISSLDNPYWKKAFWQVRRVL
ECCCCCCEEEEEECEEEEEEEEEECCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]