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The map label for this gene is 59711931

Identifier: 59711931

GI number: 59711931

Start: 1472287

End: 1472943

Strand: Reverse

Name: 59711931

Synonym: VF_1324

Alternate gene names: NA

Gene position: 1472943-1472287 (Counterclockwise)

Preceding gene: 59711932

Following gene: 59711930

Centisome position: 50.83

GC content: 36.23

Gene sequence:

>657_bases
ATGGCTATTTATAATGAAACATTTGATGGTGTTAATTTCTCACATCAAGATCTGAGTAACGCATATTATGAAGGGTGTAA
GTTTTACCTATGTAATTTTTCTCGAGCAAATTTAAGAGATGCTCAGTTTGTTGATTGCAGTTTCATTGAGCAAGGAGCAA
TTGAAGGATGCCACTTTGAGTATGCAGACTTACGAGATTCGTCATTTAAGAGTTGTAAGATAGCAATGGCAAATTTTAAA
GGCGCAAATGCATTTGGAATTGAGTTTAGAGAGTGTGATTTGAAAGGCGCTAATTTTTCTCAAGCGAGTTTTTCAAATCA
AATTAATCATCAAATGTACTTTTGTTCCGCTTACATTACGGGTTGTAATTTATCGTATGCGAATCTTGAACGCTTATGCA
TTGAAAAGTGTGATTTGTTTGAAAATAAATGGAATGGGGCGAATTTACAAGGGGCGTCCTTTAAAGGTTCAGACTTGAGT
CGAGGCTCTTTCTCCGAAGATGCATGGGAACAGTTTAAGTTTCAAGAGAGCGATTTATGTCATTGTGAATTAGAAGGCTT
AGATCCTCGTCGTATTGACTTAACTGGTGTGAAAATTTGTGGATGGCAACAAGAGCAATTGTTAGAACCGTTAGGATTGA
TTGTACTTCCTGAATAA

Upstream 100 bases:

>100_bases
AAAACTCGCACTTTTAAGTTGTTGATATTAAAGGCTTTATTTTTATTGAGTTTATTATGGTTACTGGTAGTCTTCTTCTT
AATAACCTTAAGGAGTATCT

Downstream 100 bases:

>100_bases
AGACGTGTTTTAATAGTTATTCAAAGCTTTTTAAATAGAATGAATTTATACAATGACTAAGATATTAACGATTGTTGCAA
GAATTGAAGCAAAAAATGGT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MAIYNETFDGVNFSHQDLSNAYYEGCKFYLCNFSRANLRDAQFVDCSFIEQGAIEGCHFEYADLRDSSFKSCKIAMANFK
GANAFGIEFRECDLKGANFSQASFSNQINHQMYFCSAYITGCNLSYANLERLCIEKCDLFENKWNGANLQGASFKGSDLS
RGSFSEDAWEQFKFQESDLCHCELEGLDPRRIDLTGVKICGWQQEQLLEPLGLIVLPE

Sequences:

>Translated_218_residues
MAIYNETFDGVNFSHQDLSNAYYEGCKFYLCNFSRANLRDAQFVDCSFIEQGAIEGCHFEYADLRDSSFKSCKIAMANFK
GANAFGIEFRECDLKGANFSQASFSNQINHQMYFCSAYITGCNLSYANLERLCIEKCDLFENKWNGANLQGASFKGSDLS
RGSFSEDAWEQFKFQESDLCHCELEGLDPRRIDLTGVKICGWQQEQLLEPLGLIVLPE
>Mature_217_residues
AIYNETFDGVNFSHQDLSNAYYEGCKFYLCNFSRANLRDAQFVDCSFIEQGAIEGCHFEYADLRDSSFKSCKIAMANFKG
ANAFGIEFRECDLKGANFSQASFSNQINHQMYFCSAYITGCNLSYANLERLCIEKCDLFENKWNGANLQGASFKGSDLSR
GSFSEDAWEQFKFQESDLCHCELEGLDPRRIDLTGVKICGWQQEQLLEPLGLIVLPE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 24750; Mature: 24619

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
6.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIYNETFDGVNFSHQDLSNAYYEGCKFYLCNFSRANLRDAQFVDCSFIEQGAIEGCHFE
CCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCEEECHHHHHHCCCCCCCEE
YADLRDSSFKSCKIAMANFKGANAFGIEFRECDLKGANFSQASFSNQINHQMYFCSAYIT
ECCCCCCCCCEEEEEEEECCCCCEECEEEEECCCCCCCCCHHHHHHCCCCEEEEEEEEEE
GCNLSYANLERLCIEKCDLFENKWNGANLQGASFKGSDLSRGSFSEDAWEQFKFQESDLC
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCE
HCELEGLDPRRIDLTGVKICGWQQEQLLEPLGLIVLPE
EEEECCCCCCEEEECEEEEECCCHHHHHCCCCEEEECC
>Mature Secondary Structure 
AIYNETFDGVNFSHQDLSNAYYEGCKFYLCNFSRANLRDAQFVDCSFIEQGAIEGCHFE
CCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCEEECHHHHHHCCCCCCCEE
YADLRDSSFKSCKIAMANFKGANAFGIEFRECDLKGANFSQASFSNQINHQMYFCSAYIT
ECCCCCCCCCEEEEEEEECCCCCEECEEEEECCCCCCCCCHHHHHHCCCCEEEEEEEEEE
GCNLSYANLERLCIEKCDLFENKWNGANLQGASFKGSDLSRGSFSEDAWEQFKFQESDLC
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCE
HCELEGLDPRRIDLTGVKICGWQQEQLLEPLGLIVLPE
EEEECCCCCCEEEECEEEEECCCHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA