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The map label for this gene is ycbZ [H]

Identifier: 59711900

GI number: 59711900

Start: 1443277

End: 1444947

Strand: Reverse

Name: ycbZ [H]

Synonym: VF_1293

Alternate gene names: 59711900

Gene position: 1444947-1443277 (Counterclockwise)

Preceding gene: 59711902

Following gene: 59711899

Centisome position: 49.87

GC content: 37.82

Gene sequence:

>1671_bases
ATGCAGTTAGTAGACACGCCATTTACAATTTCACCAAATTTCGCGCATATCGAAAACGATTTGAATAATGCACTCTTATC
TGAAGTTCAAGACGCCTACTCTTTGCAACCTCGATTAGTTCAAGCACTGACGAATTTCTCTCAAATCAATGGCATTAATA
TACTTCAGCTAACCGCATTAGATAATCGAGTTTATCGTGAATATGCAGCTACATGGCTAAAGAATAATAGCAAGAACCGT
GTTGATCAGGATACTGATGTACCAATCATTATTGCTGAAAGTGCATCTGAAGCAGAGCTATTTGGTATCTATCATAATAA
ATCTGACAGTTTAGAATCAGGCTTACTTCAGCAAGCTAATGGTGGTTTTTTAATTATATCGCCAAGTATCTTACTTGCTA
ATCCATACTTATGGCCTAGATTAAAAAGCGTACTTCAAGGCAGTTCTATAACGATTCCTTCAAGTGATCTTAAATCACCT
AAAGCAACAAACCACCAACTGTCTGTCGATGTAAAATTACTCATCGTTGGTGACCGAGCTTTATTAGGTGAAATTGAACA
GTTAGAACCCGACTTACTTGCCGGCATGTCAATGTACTCTGAGTACGAATTTGATACAAAAATATCAAGTGACAGCGTAA
CTGCTTACGTTCAACTCATTAATACGATATTAGTCGATAACGGACATTTACCATTAAATGATGGCCTATCGCTATTGCCT
TTATTAAAAGTTGGTGCGCGTGAGTGTGAAGATCAAACTCGATTAAACTTATGTTTAATTTGGTTAAATTCATTTCTAGC
TCATGCTTCATTAGCTTCTGAGTCAAAAACAACTATTTGTGCAGCCGATTTTATTCGAGCGATTGAATCTAAATACTATA
TTGAATCTTATTTACCATCACGAGCGTTAGACGATATTCTTGAAAACAATATTCTTATTGAAACACAAGGTGAAAAAGTT
GGCCAAATTAACGGGCTAACCGTCGTATCTGTTCCAGGGCACCCTATTTCTTATGGTGAAGCTTCACGCATTTCTTGTGT
TGTACATACTGGTGATGGTGAACTATCTGATGTTGAGCGCAAAGTGGAACTTGGTGGTAATATTCATGCTAAAGGCATGT
TGATCATGCAAGCTTATATCTTAAGCCAACTTGATTCTCGTGAACCTTTACCTTTTACCGCTTCAATGGTATTTGAACAA
TCTTATTGTGAAGTTGATGGTGACAGCGCGAGCTTAGCTGAACTGTGCGCATTATTAAGTGCCCTATCAATTAAACCAAT
AACTCAGAGTATCGCCATTACAGGCTCGGTTGATCAGTTTGGTTCTGCTCAGCCTATTGGCGGTGTTAACGAAAAAATTG
AGGCCTTTTACCAGTTATGCCAAAAACGTGGGTTAACGGGTGAACAAGGTGTTATTATCCCAGCAACAAATGGAATTAAT
CTTGTACTTTCCGATGATGTCGTTCAAGCTGTAGAAGACAACTTATTTACAATCTACCCTGTAAATAACGTTGAAGAAGC
AGTTGAGATTTTATTGGGGCTACCACTACAGTCAGAAGAACATGAGTCTGTTTTCTCTTTAATTGCTCAACATATTGAAG
ATGTTGAACATCATCCAACTCATTGTTCCGCCTTATTATGTCGAATTAAACACTGGTTTAACCAGCGCTGA

Upstream 100 bases:

>100_bases
ATATGAGATTCTGATCTAATTGCTAATGTAAGCTCTGAAAAATCAGACGTTTTACATTATGTCATGTATAATCGATTTTA
TTTTTTAGTCATAAGTAAGC

Downstream 100 bases:

>100_bases
TCCGACTTGATATGAGTACAAGTGTTAGCTAGAATTTCTGCAACTTATTTAGGAGTAATACTTTAATGCAAAACAAACCT
AGTTCTTATGATCGCGAAGA

Product: ATP-dependent protease (Lon-like)

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MQLVDTPFTISPNFAHIENDLNNALLSEVQDAYSLQPRLVQALTNFSQINGINILQLTALDNRVYREYAATWLKNNSKNR
VDQDTDVPIIIAESASEAELFGIYHNKSDSLESGLLQQANGGFLIISPSILLANPYLWPRLKSVLQGSSITIPSSDLKSP
KATNHQLSVDVKLLIVGDRALLGEIEQLEPDLLAGMSMYSEYEFDTKISSDSVTAYVQLINTILVDNGHLPLNDGLSLLP
LLKVGARECEDQTRLNLCLIWLNSFLAHASLASESKTTICAADFIRAIESKYYIESYLPSRALDDILENNILIETQGEKV
GQINGLTVVSVPGHPISYGEASRISCVVHTGDGELSDVERKVELGGNIHAKGMLIMQAYILSQLDSREPLPFTASMVFEQ
SYCEVDGDSASLAELCALLSALSIKPITQSIAITGSVDQFGSAQPIGGVNEKIEAFYQLCQKRGLTGEQGVIIPATNGIN
LVLSDDVVQAVEDNLFTIYPVNNVEEAVEILLGLPLQSEEHESVFSLIAQHIEDVEHHPTHCSALLCRIKHWFNQR

Sequences:

>Translated_556_residues
MQLVDTPFTISPNFAHIENDLNNALLSEVQDAYSLQPRLVQALTNFSQINGINILQLTALDNRVYREYAATWLKNNSKNR
VDQDTDVPIIIAESASEAELFGIYHNKSDSLESGLLQQANGGFLIISPSILLANPYLWPRLKSVLQGSSITIPSSDLKSP
KATNHQLSVDVKLLIVGDRALLGEIEQLEPDLLAGMSMYSEYEFDTKISSDSVTAYVQLINTILVDNGHLPLNDGLSLLP
LLKVGARECEDQTRLNLCLIWLNSFLAHASLASESKTTICAADFIRAIESKYYIESYLPSRALDDILENNILIETQGEKV
GQINGLTVVSVPGHPISYGEASRISCVVHTGDGELSDVERKVELGGNIHAKGMLIMQAYILSQLDSREPLPFTASMVFEQ
SYCEVDGDSASLAELCALLSALSIKPITQSIAITGSVDQFGSAQPIGGVNEKIEAFYQLCQKRGLTGEQGVIIPATNGIN
LVLSDDVVQAVEDNLFTIYPVNNVEEAVEILLGLPLQSEEHESVFSLIAQHIEDVEHHPTHCSALLCRIKHWFNQR
>Mature_556_residues
MQLVDTPFTISPNFAHIENDLNNALLSEVQDAYSLQPRLVQALTNFSQINGINILQLTALDNRVYREYAATWLKNNSKNR
VDQDTDVPIIIAESASEAELFGIYHNKSDSLESGLLQQANGGFLIISPSILLANPYLWPRLKSVLQGSSITIPSSDLKSP
KATNHQLSVDVKLLIVGDRALLGEIEQLEPDLLAGMSMYSEYEFDTKISSDSVTAYVQLINTILVDNGHLPLNDGLSLLP
LLKVGARECEDQTRLNLCLIWLNSFLAHASLASESKTTICAADFIRAIESKYYIESYLPSRALDDILENNILIETQGEKV
GQINGLTVVSVPGHPISYGEASRISCVVHTGDGELSDVERKVELGGNIHAKGMLIMQAYILSQLDSREPLPFTASMVFEQ
SYCEVDGDSASLAELCALLSALSIKPITQSIAITGSVDQFGSAQPIGGVNEKIEAFYQLCQKRGLTGEQGVIIPATNGIN
LVLSDDVVQAVEDNLFTIYPVNNVEEAVEILLGLPLQSEEHESVFSLIAQHIEDVEHHPTHCSALLCRIKHWFNQR

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=471, Percent_Identity=43.9490445859873, Blast_Score=373, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.53

Molecular weight: Translated: 60986; Mature: 60986

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVDTPFTISPNFAHIENDLNNALLSEVQDAYSLQPRLVQALTNFSQINGINILQLTAL
CCEECCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEH
DNRVYREYAATWLKNNSKNRVDQDTDVPIIIAESASEAELFGIYHNKSDSLESGLLQQAN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHCC
GGFLIISPSILLANPYLWPRLKSVLQGSSITIPSSDLKSPKATNHQLSVDVKLLIVGDRA
CCEEEEECCCEEECCCHHHHHHHHHCCCCEECCCHHCCCCCCCCCEEEEEEEEEEECCHH
LLGEIEQLEPDLLAGMSMYSEYEFDTKISSDSVTAYVQLINTILVDNGHLPLNDGLSLLP
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
LLKVGARECEDQTRLNLCLIWLNSFLAHASLASESKTTICAADFIRAIESKYYIESYLPS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
RALDDILENNILIETQGEKVGQINGLTVVSVPGHPISYGEASRISCVVHTGDGELSDVER
HHHHHHHHCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHH
KVELGGNIHAKGMLIMQAYILSQLDSREPLPFTASMVFEQSYCEVDGDSASLAELCALLS
HHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALSIKPITQSIAITGSVDQFGSAQPIGGVNEKIEAFYQLCQKRGLTGEQGVIIPATNGIN
HHCCCCCHHEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCE
LVLSDDVVQAVEDNLFTIYPVNNVEEAVEILLGLPLQSEEHESVFSLIAQHIEDVEHHPT
EEEEHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
HCSALLCRIKHWFNQR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLVDTPFTISPNFAHIENDLNNALLSEVQDAYSLQPRLVQALTNFSQINGINILQLTAL
CCEECCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEH
DNRVYREYAATWLKNNSKNRVDQDTDVPIIIAESASEAELFGIYHNKSDSLESGLLQQAN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHCC
GGFLIISPSILLANPYLWPRLKSVLQGSSITIPSSDLKSPKATNHQLSVDVKLLIVGDRA
CCEEEEECCCEEECCCHHHHHHHHHCCCCEECCCHHCCCCCCCCCEEEEEEEEEEECCHH
LLGEIEQLEPDLLAGMSMYSEYEFDTKISSDSVTAYVQLINTILVDNGHLPLNDGLSLLP
HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
LLKVGARECEDQTRLNLCLIWLNSFLAHASLASESKTTICAADFIRAIESKYYIESYLPS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
RALDDILENNILIETQGEKVGQINGLTVVSVPGHPISYGEASRISCVVHTGDGELSDVER
HHHHHHHHCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHH
KVELGGNIHAKGMLIMQAYILSQLDSREPLPFTASMVFEQSYCEVDGDSASLAELCALLS
HHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALSIKPITQSIAITGSVDQFGSAQPIGGVNEKIEAFYQLCQKRGLTGEQGVIIPATNGIN
HHCCCCCHHEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCE
LVLSDDVVQAVEDNLFTIYPVNNVEEAVEILLGLPLQSEEHESVFSLIAQHIEDVEHHPT
EEEEHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
HCSALLCRIKHWFNQR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]