| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59711878
Identifier: 59711878
GI number: 59711878
Start: 1411214
End: 1412095
Strand: Direct
Name: 59711878
Synonym: VF_1271
Alternate gene names: NA
Gene position: 1411214-1412095 (Clockwise)
Preceding gene: 59711872
Following gene: 59711879
Centisome position: 48.7
GC content: 39.91
Gene sequence:
>882_bases ATGACAGTTTTATTATTCTTACAGATCGGTCTTGTTATTGGAGGCCTAACGTTCCTTTTTATGCTTGTATCACTATGGCT TAAGAAAAAGGACTCAGAAAAAGACACTAATATATGGGCAGTTGGTCTAATTGGTGGTTTTGCAAACTTTTGTGACACTC TTGGTGTTGGAAGTTTTGCCATTAAAACGGCTGGTTATAAGCAGTTTAATTTAATCGATGACAAAGTATTACCTGGTACC TTGAATGCTCAAGCAACCATGGCAACGGTTTTTCAAGCATTGATTTTTCTTACCGCTGTTAATGTGGATTTAACGACGCT ACTTAGCCTAATTATTGCAGCGTGTGTTGGCGCAACAGTTGGTGCTCGATTAGTATCAAATTTTGATCGCCAATTGATTC GTTTGATTATGGCTGGCGCTTTGCTGGTTGTTGCATTACTGATGTTTGCAGGACGTTTAGATTTATTCCCACTAGGTGGT GAAGAGTTAGGATTAAGTGGTGAAAAATTGGTTATCGGTATTATTGGTAACTTTATTTTTGGTGCATTAATGACGGTAGG GATTGGTTTATACGCACCGTGTATGACGATGATTTACTTGTTAGGTATGAACCCGTTAGCGGCATTTCCTATTATGATGT GTTCATGCGCATTTTTATGTTTCTTTTCTGCTGGCGGTTTTATCAAGCAGAAAGCCGTGAACTCAAGAGCATCTTTGGTG GTGGCGATTACCGGACCTATTGGCGTGCTAATTGCGGCGTTCATTGTTAAATCTCTTGATGTCGATATGCTTGCTTGGTT AGTGGCGTTTGTGGTTCTTTATACTGCAGTTATGATGTTACGTTCATGGCAGCAAGGCCGAGTGACAAATAAAGCGCTAT AA
Upstream 100 bases:
>100_bases AAGGGAATGGAGTAAGCCTTTACCACATAAGGGCTGCACTGGTTTTTCTTATTAATCTGAATTACTATTCTCAGCTTTGT TTCAACTGTGTGATGTATTG
Downstream 100 bases:
>100_bases AATGCGAGTTTCTGTCACATAGTTATTGGAGATATAAAAAGTTCGTGGTATTTTCCACCTACCAATTATTTATGGATTTT TTATCATGCCAAAGGCAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane Family Protein; Permease; Na+/Solute Symporter
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTVLLFLQIGLVIGGLTFLFMLVSLWLKKKDSEKDTNIWAVGLIGGFANFCDTLGVGSFAIKTAGYKQFNLIDDKVLPGT LNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATVGARLVSNFDRQLIRLIMAGALLVVALLMFAGRLDLFPLGG EELGLSGEKLVIGIIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV VAITGPIGVLIAAFIVKSLDVDMLAWLVAFVVLYTAVMMLRSWQQGRVTNKAL
Sequences:
>Translated_293_residues MTVLLFLQIGLVIGGLTFLFMLVSLWLKKKDSEKDTNIWAVGLIGGFANFCDTLGVGSFAIKTAGYKQFNLIDDKVLPGT LNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATVGARLVSNFDRQLIRLIMAGALLVVALLMFAGRLDLFPLGG EELGLSGEKLVIGIIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV VAITGPIGVLIAAFIVKSLDVDMLAWLVAFVVLYTAVMMLRSWQQGRVTNKAL >Mature_292_residues TVLLFLQIGLVIGGLTFLFMLVSLWLKKKDSEKDTNIWAVGLIGGFANFCDTLGVGSFAIKTAGYKQFNLIDDKVLPGTL NAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATVGARLVSNFDRQLIRLIMAGALLVVALLMFAGRLDLFPLGGE ELGLSGEKLVIGIIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLVV AITGPIGVLIAAFIVKSLDVDMLAWLVAFVVLYTAVMMLRSWQQGRVTNKAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31300; Mature: 31169
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVLLFLQIGLVIGGLTFLFMLVSLWLKKKDSEKDTNIWAVGLIGGFANFCDTLGVGSFA CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHH IKTAGYKQFNLIDDKVLPGTLNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATV HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GARLVSNFDRQLIRLIMAGALLVVALLMFAGRLDLFPLGGEELGLSGEKLVIGIIGNFIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCCCCCCHHHHHHHHHHHH GALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEE VAITGPIGVLIAAFIVKSLDVDMLAWLVAFVVLYTAVMMLRSWQQGRVTNKAL EEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TVLLFLQIGLVIGGLTFLFMLVSLWLKKKDSEKDTNIWAVGLIGGFANFCDTLGVGSFA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHH IKTAGYKQFNLIDDKVLPGTLNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATV HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GARLVSNFDRQLIRLIMAGALLVVALLMFAGRLDLFPLGGEELGLSGEKLVIGIIGNFIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCCCCCCHHHHHHHHHHHH GALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEE VAITGPIGVLIAAFIVKSLDVDMLAWLVAFVVLYTAVMMLRSWQQGRVTNKAL EEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA