| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is yfaY [C]
Identifier: 59711805
GI number: 59711805
Start: 1330958
End: 1332190
Strand: Direct
Name: yfaY [C]
Synonym: VF_1198
Alternate gene names: 59711805
Gene position: 1330958-1332190 (Clockwise)
Preceding gene: 59711802
Following gene: 172087692
Centisome position: 45.93
GC content: 39.74
Gene sequence:
>1233_bases ATGTTGCAAGTAGCAATGATTAGCACAGGCGAAGAAGTTTTACATGGTGATATTGTTGATACCAATGCTGCTTGGATGTC GCAACTTTTTTATCAACATGGCTTCAAATTATCAAATCGCTCTACTGTCGGCGATAACATTGATGCGTTAGTAGCAGAGA TACACCATCAGACTAATCAAGCATCAATCGTAATTGTTAATGGTGGCTTAGGTCCAACCTCTGATGATATTTCTAGTGAA GCTGCGGCAAAAGTATTAAATACCAATTTGGTTATGTCGCAATATTGGCTTGATCGCATGCAAGCTCGTTACCTTGAACA AGGTAAAGAAATGCCACACAGTAATATCAAGCAAGCAATGCTACCTGAAGGTACACAACTTATTGATAATCCGGTAGGGA CTGCATGTGGATTCTTTATTGAAATAAACAAATCAATTGTTATTTTTACCCCAGGTGTACCGTCAGAATTCAAAGTGATG GTAGAGCACCAGATCTTGCCTCGAATGAAACAATGGCATCCAATGGTTGAAGCGTCTGAATGTAGCCGTTTATTTACCTT TGGTTTATCAGAATCTGGTATTCAAGATAAGTTGCAACAAGTTCGTTTACCTCATGGTTTTGAAATTGGTTACCGTTCAG CACTTCCATTTATTGAAGTGAAATTGTTTGGCCCTAAAAATCATGATGGACGCTTTCCTACTTTAGAGAAAATGTATCAT TTACTTGGTGATAATGTGGTGAGTGTTGATGAATCGATGCTACCTAACGTAGGTGCACTTTTAAATGAATTTTCACTGAA CTTCACGGTTGCTGAACAAGCGACAGGTGGGTGGTTAACTAATTGGTTGCAAGAGGATGAACAAATTCGTTCTCATATGA AACAAGGTTGGATTTTATCATCTCAAGTTGACCAGCAAATGGCGGGACAAGATCCATTGGCTGCTGCGTTAGCATTAGCT GCAGCAACAAGAGAAAGAACACAGACATCAATTGGCTTATCTTCAGGACCAATGCTTGAAGGAAAAGTCGCTGTAGCTCT TTCTACATCGTATGGTGAGTGGGGACAGTTGGTAAGTCTGAAGCGAGACTATAGCTATAATGAAATGCGCTCTATTATTT CAACACTAATGTTAGATATGTTGCGCCGTTGCTTAGAACGCAAGCCTATGTTTGGTGAGTACCAATCGCTAAATAGAGAA TCTGAAATATATGTACCGCAAAGTGCGCTGTAG
Upstream 100 bases:
>100_bases TTTTATCAAAATAGAGTAAAATTAAAAGTAAGATGGTTTTTTAAAGTCACATATGTGATAAATTAGAAGTAATTATAGAA ATATCAAAGAGGAAAGGTGC
Downstream 100 bases:
>100_bases ACACATTTCAGAATAAGACATAGAACACAATAAGCCCAATAGGATAACTCTTGTTGGGCTTTTTTATGCTTTTTTAACTA ACGTTTGAAATTGTAGCCCT
Product: putative competence-damage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MLQVAMISTGEEVLHGDIVDTNAAWMSQLFYQHGFKLSNRSTVGDNIDALVAEIHHQTNQASIVIVNGGLGPTSDDISSE AAAKVLNTNLVMSQYWLDRMQARYLEQGKEMPHSNIKQAMLPEGTQLIDNPVGTACGFFIEINKSIVIFTPGVPSEFKVM VEHQILPRMKQWHPMVEASECSRLFTFGLSESGIQDKLQQVRLPHGFEIGYRSALPFIEVKLFGPKNHDGRFPTLEKMYH LLGDNVVSVDESMLPNVGALLNEFSLNFTVAEQATGGWLTNWLQEDEQIRSHMKQGWILSSQVDQQMAGQDPLAAALALA AATRERTQTSIGLSSGPMLEGKVAVALSTSYGEWGQLVSLKRDYSYNEMRSIISTLMLDMLRRCLERKPMFGEYQSLNRE SEIYVPQSAL
Sequences:
>Translated_410_residues MLQVAMISTGEEVLHGDIVDTNAAWMSQLFYQHGFKLSNRSTVGDNIDALVAEIHHQTNQASIVIVNGGLGPTSDDISSE AAAKVLNTNLVMSQYWLDRMQARYLEQGKEMPHSNIKQAMLPEGTQLIDNPVGTACGFFIEINKSIVIFTPGVPSEFKVM VEHQILPRMKQWHPMVEASECSRLFTFGLSESGIQDKLQQVRLPHGFEIGYRSALPFIEVKLFGPKNHDGRFPTLEKMYH LLGDNVVSVDESMLPNVGALLNEFSLNFTVAEQATGGWLTNWLQEDEQIRSHMKQGWILSSQVDQQMAGQDPLAAALALA AATRERTQTSIGLSSGPMLEGKVAVALSTSYGEWGQLVSLKRDYSYNEMRSIISTLMLDMLRRCLERKPMFGEYQSLNRE SEIYVPQSAL >Mature_410_residues MLQVAMISTGEEVLHGDIVDTNAAWMSQLFYQHGFKLSNRSTVGDNIDALVAEIHHQTNQASIVIVNGGLGPTSDDISSE AAAKVLNTNLVMSQYWLDRMQARYLEQGKEMPHSNIKQAMLPEGTQLIDNPVGTACGFFIEINKSIVIFTPGVPSEFKVM VEHQILPRMKQWHPMVEASECSRLFTFGLSESGIQDKLQQVRLPHGFEIGYRSALPFIEVKLFGPKNHDGRFPTLEKMYH LLGDNVVSVDESMLPNVGALLNEFSLNFTVAEQATGGWLTNWLQEDEQIRSHMKQGWILSSQVDQQMAGQDPLAAALALA AATRERTQTSIGLSSGPMLEGKVAVALSTSYGEWGQLVSLKRDYSYNEMRSIISTLMLDMLRRCLERKPMFGEYQSLNRE SEIYVPQSAL
Specific function: Unknown
COG id: COG1058
COG function: function code R; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CinA family [H]
Homologues:
Organism=Escherichia coli, GI1788583, Length=284, Percent_Identity=46.830985915493, Blast_Score=265, Evalue=4e-72, Organism=Saccharomyces cerevisiae, GI6323832, Length=246, Percent_Identity=24.7967479674797, Blast_Score=80, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008135 - InterPro: IPR020817 - InterPro: IPR001453 [H]
Pfam domain/function: PF00994 MoCF_biosynth [H]
EC number: NA
Molecular weight: Translated: 45731; Mature: 45731
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQVAMISTGEEVLHGDIVDTNAAWMSQLFYQHGFKLSNRSTVGDNIDALVAEIHHQTNQ CEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCC ASIVIVNGGLGPTSDDISSEAAAKVLNTNLVMSQYWLDRMQARYLEQGKEMPHSNIKQAM EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LPEGTQLIDNPVGTACGFFIEINKSIVIFTPGVPSEFKVMVEHQILPRMKQWHPMVEASE CCCCHHHHCCCCCHHEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHH CSRLFTFGLSESGIQDKLQQVRLPHGFEIGYRSALPFIEVKLFGPKNHDGRFPTLEKMYH HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCHHHHHHH LLGDNVVSVDESMLPNVGALLNEFSLNFTVAEQATGGWLTNWLQEDEQIRSHMKQGWILS HHCCCEEECCHHHCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEH SQVDQQMAGQDPLAAALALAAATRERTQTSIGLSSGPMLEGKVAVALSTSYGEWGQLVSL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHH KRDYSYNEMRSIISTLMLDMLRRCLERKPMFGEYQSLNRESEIYVPQSAL HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCCCC >Mature Secondary Structure MLQVAMISTGEEVLHGDIVDTNAAWMSQLFYQHGFKLSNRSTVGDNIDALVAEIHHQTNQ CEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCC ASIVIVNGGLGPTSDDISSEAAAKVLNTNLVMSQYWLDRMQARYLEQGKEMPHSNIKQAM EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LPEGTQLIDNPVGTACGFFIEINKSIVIFTPGVPSEFKVMVEHQILPRMKQWHPMVEASE CCCCHHHHCCCCCHHEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHH CSRLFTFGLSESGIQDKLQQVRLPHGFEIGYRSALPFIEVKLFGPKNHDGRFPTLEKMYH HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCHHHHHHH LLGDNVVSVDESMLPNVGALLNEFSLNFTVAEQATGGWLTNWLQEDEQIRSHMKQGWILS HHCCCEEECCHHHCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEH SQVDQQMAGQDPLAAALALAAATRERTQTSIGLSSGPMLEGKVAVALSTSYGEWGQLVSL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHH KRDYSYNEMRSIISTLMLDMLRRCLERKPMFGEYQSLNRESEIYVPQSAL HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA