| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is murP
Identifier: 59711722
GI number: 59711722
Start: 1227806
End: 1229260
Strand: Direct
Name: murP
Synonym: VF_1115
Alternate gene names: 59711722
Gene position: 1227806-1229260 (Clockwise)
Preceding gene: 59711721
Following gene: 172087691
Centisome position: 42.37
GC content: 41.17
Gene sequence:
>1455_bases ATGGCTAAAATAACCACTTCCATGATTCAAGAGATACTGACCGCAATTGGTGGCAAATCAAATGTCATTAAGTGTGGAAA CTGTATGACACGTCTGCGCCTTACCCTTCATGATGATAATTTAGCAGATAGAGACACTATCAAACGTATTGCAGGTGTGA TGGGACTTGTTGAGAGTGATGATCAATTTCAAATCGTATTAGGTCCGGGTAAAGCACAAACGGCAGCTGAGATGATGAAT GAAATGATGGAAGGAGAGGAAGATAACTCAGCTTCAACAACGGCCGAAAGCCGAGATTTAAAAGACGTTGCATCAGAACA TAAACAGAAGTTAAAGAAAAAACAAACCAGCGCAGCACAACGTTTTTTGAGCAAGTTTGCTACCATTTTTACTCCATTAA TTCCGGGGTTCATTGCTGCTGGTCTGTTACTTGGTTTCGCAACCTTACTTGATCAAATTTATATCATAGGTAATGAGTCA CCAAATGCGAATCTGGTGGATTTAATTCTTTATATGAAAGTCTTTAGTAAAGGCTTATTCAGCTTCTTAAGTATTTTAAT TGGCTACAATGCACAACAAGCATTTGGTGGTTCAGGTGTAAATGGTGCGATCCTAGCGTCATTGTTTGTACTTGGTTATA ACCCTGATGCAACCTCTGGTATTTATTCTGGTATGACGGACTTCTTTGGTCATGGTATTGACCCAAGAGGTAACATTATT GGTGTATTGATTGCCGCTATTATAGGTGCTGGCGTTGAGAAGAAAGTTCGCCAATACATGCCTGATAACCTAGATATGAT TTTAACTTCGGTTGTGACGTTACTTATTATGGGTGCGGTTACCTTTGTGGTTATCATGCCGATAGGTGGTGTGTTATTCC AAGGTATGTCATGGTTATTCATGAACTTAAACGGCAACCCAATTGGTAGTGCAATTCTTGCGGGTCTGTTTTTAATCTCA GTAATGTTTGGTATTCACCAAGGCTTTGTACCGGTTTACTTTGCTCTAATGGATGCACAAGGCTTTAACTCACTGTTCCC AATCCTTGCGATGGCAGGTGCAGGTCAAGTGGGGGCGGCATTGGCTCTGTATGCAAAAGCAAATAAAGACGCGTTGTTAC GTACTCAAGTAAAAGGTTCTATTATCCCAGGCTTTTTAGGCATAGGTGAGCCACTTATTTACGGTGTAACACTTCCACGA GTGAAACCATTTATCACAGCTTGTGTAGGTGGTGCTGCAGGTGGCTTCTTTATCGGCTTAGTTTCATACATGGGCTTACC AGTAGGTTTGAATACTGTATTTGGTCCATCAGGTATCGTTGCTCTACCTCTTATGACATCTAACGCAGGTATCTTTGCCG GAATGCTAGTCTTTGCAGCAGGTTTGGTCATCTCATATGTCGCTGGCTTTCTTGCAACTTGGTTCTTCGGAACAAAGAAT GTTGATTTAAGCTAA
Upstream 100 bases:
>100_bases TTTCAGACCAGTAATTGGTAACAAGGCCTTATACCAATCTGGATGAATCAAATTTTATCTAGGTTGGTACCTCAACGAAC AAATTAAAAAGGAACAGAAG
Downstream 100 bases:
>100_bases GAGAAGAGTTCATAGAATAAATTAACGAATAAAAAGTACTTTCCCCTATAAGTACGCTAAGGCCTCACAGGTACCACTGT GGGGCCTTTTTTCTTGATTT
Product: PTS system N-acetylmuramic acid transporter subunits EIIBC
Products: NA
Alternate protein names: EIIBC-MurNAc; N-acetylmuramic acid-specific phosphotransferase enzyme IIB component; PTS system N-acetylmuramic acid-specific EIIB component; N-acetylmuramic acid permease IIC component; PTS system N-acetylmuramic acid-specific EIIC component
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MAKITTSMIQEILTAIGGKSNVIKCGNCMTRLRLTLHDDNLADRDTIKRIAGVMGLVESDDQFQIVLGPGKAQTAAEMMN EMMEGEEDNSASTTAESRDLKDVASEHKQKLKKKQTSAAQRFLSKFATIFTPLIPGFIAAGLLLGFATLLDQIYIIGNES PNANLVDLILYMKVFSKGLFSFLSILIGYNAQQAFGGSGVNGAILASLFVLGYNPDATSGIYSGMTDFFGHGIDPRGNII GVLIAAIIGAGVEKKVRQYMPDNLDMILTSVVTLLIMGAVTFVVIMPIGGVLFQGMSWLFMNLNGNPIGSAILAGLFLIS VMFGIHQGFVPVYFALMDAQGFNSLFPILAMAGAGQVGAALALYAKANKDALLRTQVKGSIIPGFLGIGEPLIYGVTLPR VKPFITACVGGAAGGFFIGLVSYMGLPVGLNTVFGPSGIVALPLMTSNAGIFAGMLVFAAGLVISYVAGFLATWFFGTKN VDLS
Sequences:
>Translated_484_residues MAKITTSMIQEILTAIGGKSNVIKCGNCMTRLRLTLHDDNLADRDTIKRIAGVMGLVESDDQFQIVLGPGKAQTAAEMMN EMMEGEEDNSASTTAESRDLKDVASEHKQKLKKKQTSAAQRFLSKFATIFTPLIPGFIAAGLLLGFATLLDQIYIIGNES PNANLVDLILYMKVFSKGLFSFLSILIGYNAQQAFGGSGVNGAILASLFVLGYNPDATSGIYSGMTDFFGHGIDPRGNII GVLIAAIIGAGVEKKVRQYMPDNLDMILTSVVTLLIMGAVTFVVIMPIGGVLFQGMSWLFMNLNGNPIGSAILAGLFLIS VMFGIHQGFVPVYFALMDAQGFNSLFPILAMAGAGQVGAALALYAKANKDALLRTQVKGSIIPGFLGIGEPLIYGVTLPR VKPFITACVGGAAGGFFIGLVSYMGLPVGLNTVFGPSGIVALPLMTSNAGIFAGMLVFAAGLVISYVAGFLATWFFGTKN VDLS >Mature_483_residues AKITTSMIQEILTAIGGKSNVIKCGNCMTRLRLTLHDDNLADRDTIKRIAGVMGLVESDDQFQIVLGPGKAQTAAEMMNE MMEGEEDNSASTTAESRDLKDVASEHKQKLKKKQTSAAQRFLSKFATIFTPLIPGFIAAGLLLGFATLLDQIYIIGNESP NANLVDLILYMKVFSKGLFSFLSILIGYNAQQAFGGSGVNGAILASLFVLGYNPDATSGIYSGMTDFFGHGIDPRGNIIG VLIAAIIGAGVEKKVRQYMPDNLDMILTSVVTLLIMGAVTFVVIMPIGGVLFQGMSWLFMNLNGNPIGSAILAGLFLISV MFGIHQGFVPVYFALMDAQGFNSLFPILAMAGAGQVGAALALYAKANKDALLRTQVKGSIIPGFLGIGEPLIYGVTLPRV KPFITACVGGAAGGFFIGLVSYMGLPVGLNTVFGPSGIVALPLMTSNAGIFAGMLVFAAGLVISYVAGFLATWFFGTKNV DLS
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain
Homologues:
Organism=Escherichia coli, GI1788769, Length=485, Percent_Identity=61.4432989690722, Blast_Score=588, Evalue=1e-169, Organism=Escherichia coli, GI1790159, Length=442, Percent_Identity=27.3755656108597, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI2367362, Length=434, Percent_Identity=23.2718894009217, Blast_Score=128, Evalue=9e-31, Organism=Escherichia coli, GI48994906, Length=428, Percent_Identity=24.0654205607477, Blast_Score=107, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PTYBC_VIBF1 (Q5E5T6)
Other databases:
- EMBL: CP000020 - RefSeq: YP_204498.1 - ProteinModelPortal: Q5E5T6 - SMR: Q5E5T6 - STRING: Q5E5T6 - GeneID: 3278403 - GenomeReviews: CP000020_GR - KEGG: vfi:VF_1115 - NMPDR: fig|312309.3.peg.962 - eggNOG: COG1263 - HOGENOM: HBG673521 - OMA: RTQIKGA - PhylomeDB: Q5E5T6 - ProtClustDB: PRK09586 - BioCyc: VFIS312309:VF1115-MONOMER - InterPro: IPR018113 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - Gene3D: G3DSA:3.30.1360.60
Pfam domain/function: PF00367 PTS_EIIB; PF02378 PTS_EIIC; SSF55604 PTS_EIIB
EC number: =2.7.1.69
Molecular weight: Translated: 51099; Mature: 50968
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: PS51098 PTS_EIIB_TYPE_1; PS01035 PTS_EIIB_TYPE_1_CYS; PS51103 PTS_EIIC_TYPE_1
Important sites: ACT_SITE 28-28
Signals:
None
Transmembrane regions:
HASH(0xef18a2c)-; HASH(0x10da818c)-; HASH(0xfb9cd1c)-; HASH(0x10d8fdcc)-; HASH(0x10cfc0f4)-; HASH(0x1006bfb0)-; HASH(0x10d0e870)-; HASH(0x10931a3c)-; HASH(0xfce22c0)-; HASH(0x10571680)-;
Cys/Met content:
0.6 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKITTSMIQEILTAIGGKSNVIKCGNCMTRLRLTLHDDNLADRDTIKRIAGVMGLVESD CCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCC DQFQIVLGPGKAQTAAEMMNEMMEGEEDNSASTTAESRDLKDVASEHKQKLKKKQTSAAQ CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RFLSKFATIFTPLIPGFIAAGLLLGFATLLDQIYIIGNESPNANLVDLILYMKVFSKGLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHH SFLSILIGYNAQQAFGGSGVNGAILASLFVLGYNPDATSGIYSGMTDFFGHGIDPRGNII HHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHH GVLIAAIIGAGVEKKVRQYMPDNLDMILTSVVTLLIMGAVTFVVIMPIGGVLFQGMSWLF HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE MNLNGNPIGSAILAGLFLISVMFGIHQGFVPVYFALMDAQGFNSLFPILAMAGAGQVGAA EECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHH LALYAKANKDALLRTQVKGSIIPGFLGIGEPLIYGVTLPRVKPFITACVGGAAGGFFIGL HHHHHHCCCCHHHHHHHCCCCCCHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHHH VSYMGLPVGLNTVFGPSGIVALPLMTSNAGIFAGMLVFAAGLVISYVAGFLATWFFGTKN HHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VDLS CCCH >Mature Secondary Structure AKITTSMIQEILTAIGGKSNVIKCGNCMTRLRLTLHDDNLADRDTIKRIAGVMGLVESD CCHHHHHHHHHHHHHCCCCCEEECCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHCCCC DQFQIVLGPGKAQTAAEMMNEMMEGEEDNSASTTAESRDLKDVASEHKQKLKKKQTSAAQ CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RFLSKFATIFTPLIPGFIAAGLLLGFATLLDQIYIIGNESPNANLVDLILYMKVFSKGLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHH SFLSILIGYNAQQAFGGSGVNGAILASLFVLGYNPDATSGIYSGMTDFFGHGIDPRGNII HHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHH GVLIAAIIGAGVEKKVRQYMPDNLDMILTSVVTLLIMGAVTFVVIMPIGGVLFQGMSWLF HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE MNLNGNPIGSAILAGLFLISVMFGIHQGFVPVYFALMDAQGFNSLFPILAMAGAGQVGAA EECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHH LALYAKANKDALLRTQVKGSIIPGFLGIGEPLIYGVTLPRVKPFITACVGGAAGGFFIGL HHHHHHCCCCHHHHHHHCCCCCCHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHHH VSYMGLPVGLNTVFGPSGIVALPLMTSNAGIFAGMLVFAAGLVISYVAGFLATWFFGTKN HHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VDLS CCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA