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The map label for this gene is ybfI [H]

Identifier: 59711681

GI number: 59711681

Start: 1187324

End: 1188145

Strand: Reverse

Name: ybfI [H]

Synonym: VF_1074

Alternate gene names: 59711681

Gene position: 1188145-1187324 (Counterclockwise)

Preceding gene: 59711682

Following gene: 59711680

Centisome position: 41.01

GC content: 32.85

Gene sequence:

>822_bases
ATGGACGTTATGTTGGCTAATTCAAATCCTCACTTTTTAAGATCATCAATTCTTCCGTTTGAATTACGTTATTCAAGTAA
TTCAAGCGCCTGCTATAAAAAACATACACATCAAGAATTTTCAATTGGTGTCGTGGATAGTGGGATTAGTGAGTATTTCA
ATCAAAATAAAAAACAAACGATATCCCCTGGTTCTACGGTAATAGTTAACCCTGAAGAAGTTCACTCCTGTAATCCACAG
AAAGGAACCAATTGGAGTTATAAAATGCTCTACGTAGAACCAGAGTGGATTGCAAAGTTACAATCTCAAATATTAAATGA
TAACAACAATACATTCAGACCCTTTCAAATCACCCATACTGATTGCCCTTTCATTTATAGAGGTTTTCAATCTCTGTCTC
ATACTCTTATAGAAGATGAATCAAAAATAAAAGTAGAACAAACAGCAATCAACTTTTTTTCTGAATTGATTTTAAAAGAT
ACAAACAACCCTTCTCTTGATGTCATTTCTAAAAAGGCGATCGATTGTGCATATCAATATATTTCAGATAACTTTGATAA
GAATATTTCTATTTCTGAGATTGCTGAAGTATCTGGATTAAGTGAATTCTACCTTATCCACTCATTCAGAAAACAATACG
GAATTACACCTCATGCTTACCAAATTGTAATGCGAATTAATAAAGCTAAGGCCTTATTAAAAAATGGGGAAAACATTGCA
TCTATTGCGACAGATCTTGGTTTTACAGACCAAAGCCACTTCCATCGCAATTTTAAAAGTGTTGTTGCTGCTACTCCAAA
GCAATATAAACAAAGTTTATAA

Upstream 100 bases:

>100_bases
AGTATCTCGAACATCCTATCCACTATAAGTTATTTAATCGTATTATGGGAGGGTTGCTCGCACTAACAGTAGTGTATGTA
TTCTTTATATCAAAATAATA

Downstream 100 bases:

>100_bases
TTTTTACTTCGACTTCTTTGTTGATATATTTCTGCGTTACTGTTTCAATATAGTTAATTAAATAATAATAACACTAGGAT
TGACTATTCATGAATTTACG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDVMLANSNPHFLRSSILPFELRYSSNSSACYKKHTHQEFSIGVVDSGISEYFNQNKKQTISPGSTVIVNPEEVHSCNPQ
KGTNWSYKMLYVEPEWIAKLQSQILNDNNNTFRPFQITHTDCPFIYRGFQSLSHTLIEDESKIKVEQTAINFFSELILKD
TNNPSLDVISKKAIDCAYQYISDNFDKNISISEIAEVSGLSEFYLIHSFRKQYGITPHAYQIVMRINKAKALLKNGENIA
SIATDLGFTDQSHFHRNFKSVVAATPKQYKQSL

Sequences:

>Translated_273_residues
MDVMLANSNPHFLRSSILPFELRYSSNSSACYKKHTHQEFSIGVVDSGISEYFNQNKKQTISPGSTVIVNPEEVHSCNPQ
KGTNWSYKMLYVEPEWIAKLQSQILNDNNNTFRPFQITHTDCPFIYRGFQSLSHTLIEDESKIKVEQTAINFFSELILKD
TNNPSLDVISKKAIDCAYQYISDNFDKNISISEIAEVSGLSEFYLIHSFRKQYGITPHAYQIVMRINKAKALLKNGENIA
SIATDLGFTDQSHFHRNFKSVVAATPKQYKQSL
>Mature_273_residues
MDVMLANSNPHFLRSSILPFELRYSSNSSACYKKHTHQEFSIGVVDSGISEYFNQNKKQTISPGSTVIVNPEEVHSCNPQ
KGTNWSYKMLYVEPEWIAKLQSQILNDNNNTFRPFQITHTDCPFIYRGFQSLSHTLIEDESKIKVEQTAINFFSELILKD
TNNPSLDVISKKAIDCAYQYISDNFDKNISISEIAEVSGLSEFYLIHSFRKQYGITPHAYQIVMRINKAKALLKNGENIA
SIATDLGFTDQSHFHRNFKSVVAATPKQYKQSL

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=227, Percent_Identity=29.0748898678414, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31151; Mature: 31151

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVMLANSNPHFLRSSILPFELRYSSNSSACYKKHTHQEFSIGVVDSGISEYFNQNKKQT
CCEEEECCCCHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEEEEHHHHHHHHCCCCCEE
ISPGSTVIVNPEEVHSCNPQKGTNWSYKMLYVEPEWIAKLQSQILNDNNNTFRPFQITHT
ECCCCEEEECHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCEEEECC
DCPFIYRGFQSLSHTLIEDESKIKVEQTAINFFSELILKDTNNPSLDVISKKAIDCAYQY
CCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ISDNFDKNISISEIAEVSGLSEFYLIHSFRKQYGITPHAYQIVMRINKAKALLKNGENIA
HHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHH
SIATDLGFTDQSHFHRNFKSVVAATPKQYKQSL
HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MDVMLANSNPHFLRSSILPFELRYSSNSSACYKKHTHQEFSIGVVDSGISEYFNQNKKQT
CCEEEECCCCHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEEEEHHHHHHHHCCCCCEE
ISPGSTVIVNPEEVHSCNPQKGTNWSYKMLYVEPEWIAKLQSQILNDNNNTFRPFQITHT
ECCCCEEEECHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCEEEECC
DCPFIYRGFQSLSHTLIEDESKIKVEQTAINFFSELILKDTNNPSLDVISKKAIDCAYQY
CCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ISDNFDKNISISEIAEVSGLSEFYLIHSFRKQYGITPHAYQIVMRINKAKALLKNGENIA
HHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHH
SIATDLGFTDQSHFHRNFKSVVAATPKQYKQSL
HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]