| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is hisB [H]
Identifier: 59711622
GI number: 59711622
Start: 1122362
End: 1123435
Strand: Direct
Name: hisB [H]
Synonym: VF_1015
Alternate gene names: 59711622
Gene position: 1122362-1123435 (Clockwise)
Preceding gene: 59711621
Following gene: 59711623
Centisome position: 38.74
GC content: 41.9
Gene sequence:
>1074_bases GTGAGCAAACAACAAAAGATTTTATTTATCGACCGTGATGGCACCTTAATTGTTGAGCCGCCGGTGGATTTTCAAGTAGA CCGTTTAGATAAGCTAAAGTTTGAGCCTTTGGTTATTCCTTCTCTACTTTCTCTTCAAGATGCCGGTTACCGTTTAGTTA TGGTGACGAACCAAGACGGTTTAGGTACAGATAGCTACCCTCAGGATGAGTTTGATGCACCACATAATATGATGATGGAG TTTTTTGAATCTCAAGGGGTGAAGTTTGATGATGTTCTTATTTGTCCACACTTTGAAGAAGATAATTGCTCATGTCGTAA ACCCAAATTAGGCATGGTTAAAGAATACCTTCAAGGTGGAAGAGTCGATTTTCAACACTCAGTTGTGATTGGTGATCGCC AAACGGATCTTCAATTAGCTGAAAACATGGCGATCCGTGGTATTCAGTATCATCCAGAAACGATGAACTGGCCTGCGATC TTAAAAGATCTGACCGTAAATGCGCGTACTGCAGAAGTAATACGCACAACCAAAGAAACGGACATTAAAGTGTTTGTTAA TCTGGATGAGCAAGGCGGCAATGAGATCACTACTGGTCTTGGTTTCTTTGATCACATGCTTGATCAGATTGCTACACACG GCGGTTTCCAAATGAAAATCAATGTAGAGGGCGACTTACACATTGATGATCACCATACCATTGAAGATACAGCTCTTGCA TTGGGAGAAGCGTTAAAAGAGGCGCTAGGCGACAAGCGTGGTATTGGTCGTTTTGGATTCAGCTTGCCAATGGATGAGTG TTTAGCACAATGTGCGCTTGATTTATCTGGTCGTCCATATCTGAAGTTTGATGCTGAATTTAGCCGTGAGCAGGTAGGAG ATTTATCAACCGAAATGGTAGTTCACTTCTTCCGCTCTCTAACGGATACTCTTGCTTGTACGTTACACCTTTCTTCATCA GGTTATAACGATCACCACATTATTGAAAGCCTATTTAAAGCGTTTGGTCGTACGTTACGCCAAGCGATTAAAGTAGAAGG TAATGAACTGCCAAGCTCAAAAGGCGTATTGTAG
Upstream 100 bases:
>100_bases TCATTTACTTACTGTGATTGGTATATGTTATCCCCAAGCTTAGGAATAAGGCTTGGGGCTTATCAAGAATAAAATTAGAA AAAATTAAAAGGACGTTCCT
Downstream 100 bases:
>100_bases GAGTGACTATGACAAATCAAAACGTCGTTATTATTGATACGGGTTGTTCTAACGTTTCATCAGTGAGATTTGCGATTGAG CGTTTGGGTTACGAGGTTAC
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD [H]
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MSKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLSLQDAGYRLVMVTNQDGLGTDSYPQDEFDAPHNMMME FFESQGVKFDDVLICPHFEEDNCSCRKPKLGMVKEYLQGGRVDFQHSVVIGDRQTDLQLAENMAIRGIQYHPETMNWPAI LKDLTVNARTAEVIRTTKETDIKVFVNLDEQGGNEITTGLGFFDHMLDQIATHGGFQMKINVEGDLHIDDHHTIEDTALA LGEALKEALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAEFSREQVGDLSTEMVVHFFRSLTDTLACTLHLSSS GYNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL
Sequences:
>Translated_357_residues MSKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLSLQDAGYRLVMVTNQDGLGTDSYPQDEFDAPHNMMME FFESQGVKFDDVLICPHFEEDNCSCRKPKLGMVKEYLQGGRVDFQHSVVIGDRQTDLQLAENMAIRGIQYHPETMNWPAI LKDLTVNARTAEVIRTTKETDIKVFVNLDEQGGNEITTGLGFFDHMLDQIATHGGFQMKINVEGDLHIDDHHTIEDTALA LGEALKEALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAEFSREQVGDLSTEMVVHFFRSLTDTLACTLHLSSS GYNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL >Mature_356_residues SKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLSLQDAGYRLVMVTNQDGLGTDSYPQDEFDAPHNMMMEF FESQGVKFDDVLICPHFEEDNCSCRKPKLGMVKEYLQGGRVDFQHSVVIGDRQTDLQLAENMAIRGIQYHPETMNWPAIL KDLTVNARTAEVIRTTKETDIKVFVNLDEQGGNEITTGLGFFDHMLDQIATHGGFQMKINVEGDLHIDDHHTIEDTALAL GEALKEALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAEFSREQVGDLSTEMVVHFFRSLTDTLACTLHLSSSG YNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI87082027, Length=353, Percent_Identity=69.971671388102, Blast_Score=518, Evalue=1e-148, Organism=Escherichia coli, GI1786399, Length=150, Percent_Identity=30.6666666666667, Blast_Score=73, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324776, Length=165, Percent_Identity=49.0909090909091, Blast_Score=161, Evalue=1e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR013954 - InterPro: IPR020568 [H]
Pfam domain/function: PF00475 IGPD; PF08645 PNK3P [H]
EC number: =3.1.3.15; =4.2.1.19 [H]
Molecular weight: Translated: 40115; Mature: 39984
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00954 IGP_DEHYDRATASE_1 ; PS00955 IGP_DEHYDRATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLSLQDAGYRLVMVTNQDG CCCCCEEEEEECCCCEEECCCCCCCCCCHHHCCCCCEEHHHHHHHCCCCEEEEEEECCCC LGTDSYPQDEFDAPHNMMMEFFESQGVKFDDVLICPHFEEDNCSCRKPKLGMVKEYLQGG CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCC RVDFQHSVVIGDRQTDLQLAENMAIRGIQYHPETMNWPAILKDLTVNARTAEVIRTTKET CCEEEEEEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHHHHHCCCCHHHHHHHHCCCC DIKVFVNLDEQGGNEITTGLGFFDHMLDQIATHGGFQMKINVEGDLHIDDHHTIEDTALA CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEECCCCCHHHHHHH LGEALKEALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAEFSREQVGDLSTEMV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHCHHHHHH VHFFRSLTDTLACTLHLSSSGYNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL HHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKFEPLVIPSLLSLQDAGYRLVMVTNQDG CCCCEEEEEECCCCEEECCCCCCCCCCHHHCCCCCEEHHHHHHHCCCCEEEEEEECCCC LGTDSYPQDEFDAPHNMMMEFFESQGVKFDDVLICPHFEEDNCSCRKPKLGMVKEYLQGG CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCC RVDFQHSVVIGDRQTDLQLAENMAIRGIQYHPETMNWPAILKDLTVNARTAEVIRTTKET CCEEEEEEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHHHHHCCCCHHHHHHHHCCCC DIKVFVNLDEQGGNEITTGLGFFDHMLDQIATHGGFQMKINVEGDLHIDDHHTIEDTALA CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEECCCCCHHHHHHH LGEALKEALGDKRGIGRFGFSLPMDECLAQCALDLSGRPYLKFDAEFSREQVGDLSTEMV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHCHHHHHH VHFFRSLTDTLACTLHLSSSGYNDHHIIESLFKAFGRTLRQAIKVEGNELPSSKGVL HHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]